View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12243_low_1 (Length: 1087)
Name: NF12243_low_1
Description: NF12243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12243_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 786; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 786; E-Value: 0
Query Start/End: Original strand, 3 - 1070
Target Start/End: Original strand, 55695358 - 55696415
Alignment:
| Q |
3 |
agcagaacctgtggaagaagtaaccaccacagaagcataaaaagtgatcagaaaggagtctatgggtaccagtggaagaaactacttttttcacatgtca |
102 |
Q |
| |
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||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||| |
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| T |
55695358 |
agcagcaccagtggaagaagtaaccaccacagaagcataaaaagtgatcagaaaggagtctagttgtt---gt--------ctacttttttcacatgtca |
55695446 |
T |
|
| Q |
103 |
aagttgatgagaagcttttccgctttatttgtttggtttcttttgtcattgatcttattgtgaaggtaagtctatgggtatggctttacggatttattat |
202 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
55695447 |
aagttgatgagaagcttttctgctttatttgtttggcttcttttgtcattgatcttattgtgaaggta---ctatgggtatggctttacggatttattat |
55695543 |
T |
|
| Q |
203 |
tatataaggagctatagccactgaagcttgtttggtcattatgtatttctcctggtttgaataaattatannnnnnnnnnnnnnnnngccgaaactctat |
302 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
55695544 |
tatataaggagctatagccactgaagcttgtttggtcattatgtatttctcctggtttgaataaattatattttacttttttattttgccaaaactctat |
55695643 |
T |
|
| Q |
303 |
cataatttacccacaggatttcagaaagaggggaagagtgcaccacaagataattagaaaacatgtttttggaaaggggttttatgaaataaaaccacat |
402 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
55695644 |
cataatttactcacaggatttcagaaagaggggaagagtgcaccacaagataattagaaaacatgtttttggaaagggattttatgaaataaaaccacat |
55695743 |
T |
|
| Q |
403 |
tatcaaacggcaagttaaagagccttaaaaaactgcaactgatgacaaaaataatgcaattttgatttaaaaagttggcttgaattttgtttttctcctc |
502 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
55695744 |
tatcaaacggcaagttaaagagccttaaaaaactgcaactaatgacaaaaataatgcaattttgatttaaaaagttggcttgaattttgtttttctcttc |
55695843 |
T |
|
| Q |
503 |
cgaaaggaaaggacaaaagcaagaatgataatatctgagatgctaaaactgatatcttgaattgagtatagggagtagatttgctgcatgagcaagaatg |
602 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55695844 |
tgaaaggaaaggacaaaagcaagaatgataatatctgagatgctaaaattgatatcttgaattgagtatagggagtagatttgctgcatgagcaagaatg |
55695943 |
T |
|
| Q |
603 |
tatgaagtcaaaacctaatgagaaataccaacatcacaatctctaaaacactatttactgactgaaatttgaaattcataggg--atcccatagaaacta |
700 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
55695944 |
tgtgaagtcaaaacctaatgagaaataccaacatcacaatctctaaaacactatttactgactgaaatttgaaattcatagggatatcccatagaaacta |
55696043 |
T |
|
| Q |
701 |
gggaaatggattctctcaattgggnnnnnnnncttgaggaaataatgaggtgatcttaaccattgatctccatattatcaatggtcaagatcactgatta |
800 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
55696044 |
gggaaatggattctctcaattgggaaaaaaaacttgaggaaataatgaggagatcttaaccattgatctccatattatcaatggtcaagatcagtgatta |
55696143 |
T |
|
| Q |
801 |
agatctctacattattgcctcaa--annnnnnnncaatagagagaatcttgatccaatgtttggttgctgctacaccacgtagtttcccaatttgcacaa |
898 |
Q |
| |
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|||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
55696144 |
agatctctacattatttcctcaagttttttttttcaatagagagaatcttgatcccgtgtttggttgctgctacaccacgtagtttcccaatttgaacaa |
55696243 |
T |
|
| Q |
899 |
tgcatttaccttggaacgcaagaaaaccgatgctatcgccaaaccaaacgtatacataacacatttcagaaagtgttcgagaatgcgctgctagcacttc |
998 |
Q |
| |
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|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55696244 |
tgcatttaccttggaatgcaagaaaactgatgctatcgccaaaccaaacgtatacataacacatttcagaaagtgttcgagaatgcgctgctagcacttc |
55696343 |
T |
|
| Q |
999 |
acaaacttaattgttgtgccacactcccgatgacgaaccagcagctattaactagaatgtagatataaaaaa |
1070 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
55696344 |
acaaacttaatggttgtgccacactcccgatgacgaaccagcagctattaacttgaatgtagatataaaaaa |
55696415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 116; Significance: 2e-58; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 293 - 533
Target Start/End: Complemental strand, 35804064 - 35803815
Alignment:
| Q |
293 |
gaaactctatcataatttacccacaggatttcagaaagaggggaagagtgcaccacaagataattagaaaacatgtttttggaaaggggttttatgaaat |
392 |
Q |
| |
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|||| |||||||||||||||||| |||||||||||||||||| | ||||||||||||||| |||||||||||| ||||| |||||| ||||| ||||| |
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| T |
35804064 |
gaaagtctatcataatttacccaaaggatttcagaaagaggg-aggagtgcaccacaagaaaattagaaaacaaacttttgtaaagggattttaagaaat |
35803966 |
T |
|
| Q |
393 |
aaaaccacattatcaaacggcaagttaaagagccttaaaaaactgcaactgat------------gacaaaaataatgcaattttgatttaaaaagttgg |
480 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
35803965 |
aaaaccacattatcaaaaggcaagttaaagagcctta-aaaattgcaactgataaaaaaaatgacaacaaaaataatgcaattttgaattaaaaagttgg |
35803867 |
T |
|
| Q |
481 |
cttgaattttgtttttctcctccgaaaggaaaggacaaaagcaagaatgataa |
533 |
Q |
| |
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||||||||||||||||||| || |||||||| |||||||| ||| |||||||| |
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| T |
35803866 |
cttgaattttgtttttctcttctgaaaggaagggacaaaaacaa-aatgataa |
35803815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 89 - 207
Target Start/End: Complemental strand, 35804319 - 35804198
Alignment:
| Q |
89 |
tttttcacatgtcaaagttgatgagaagcttttccgctttatttgtttggtttc---ttttgtcattgatcttattgtgaaggtaagtctatgggtatgg |
185 |
Q |
| |
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||||||||| |||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||| ||||||||||||| ||||||||| |
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| T |
35804319 |
tttttcacaagtcaaagttgatgagaagcttttctattttatttgtttggttttgttttttttcattgatcttattttgaaggtaagtctttgggtatgg |
35804220 |
T |
|
| Q |
186 |
ctttacggatttattattatat |
207 |
Q |
| |
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|||||| || |||||||||||| |
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| T |
35804219 |
ctttacagaattattattatat |
35804198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 35804127 - 35804087
Alignment:
| Q |
232 |
gtttggtcattatgtatttctcctggtttgaataaattata |
272 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||| |
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| T |
35804127 |
gtttggtcattatgtatttcttctggtttgaataaattata |
35804087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 751 - 792
Target Start/End: Complemental strand, 7898204 - 7898163
Alignment:
| Q |
751 |
tgatcttaaccattgatctccatattatcaatggtcaagatc |
792 |
Q |
| |
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| T |
7898204 |
tgatcttgaccattgatctccacattatcaatggtcaagatc |
7898163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 752 - 784
Target Start/End: Complemental strand, 26919532 - 26919500
Alignment:
| Q |
752 |
gatcttaaccattgatctccatattatcaatgg |
784 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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|
| T |
26919532 |
gatcttaaccattgatctccatattatcaatgg |
26919500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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