View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12243_low_2 (Length: 353)
Name: NF12243_low_2
Description: NF12243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12243_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 223 - 338
Target Start/End: Original strand, 42635724 - 42635839
Alignment:
| Q |
223 |
aagctcacttaccacctcctaaagattatgtagcatagacacttcatattgaaaatgcgtctggagtacttcatattgaagatgcatctggagcctgaca |
322 |
Q |
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| T |
42635724 |
aagctcacttaccacctcctaaagattatgtagcatagacacttcatactgaagatgcgtctagagcacttcatattgaagatgcgtctggagcctgaca |
42635823 |
T |
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| Q |
323 |
caagtcaggatccaac |
338 |
Q |
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| T |
42635824 |
caagtcagtatccaac |
42635839 |
T |
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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 119 - 157
Target Start/End: Original strand, 42635686 - 42635724
Alignment:
| Q |
119 |
ttgaaacaatagctgttcataagtatacatacctccata |
157 |
Q |
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| T |
42635686 |
ttgaaacaatagctgttcataagtatacatacctccata |
42635724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 111 - 189
Target Start/End: Complemental strand, 7228671 - 7228593
Alignment:
| Q |
111 |
tgaaaagattgaaacaatagctgttcataagtatacatacctccatatttgggtgctgagacaaaagattggacaagtg |
189 |
Q |
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| T |
7228671 |
tgaaaaggttgaaacaatagatgctgataagtatacataccttcatatttgggtgctgagacaaaaggttggacaagtg |
7228593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 49599089 - 49599139
Alignment:
| Q |
139 |
aagtatacatacctccatatttgggtgctgagacaaaagattggacaagtg |
189 |
Q |
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| T |
49599089 |
aagtatacataccttcatatttgggtgctgagacaaaaggttggacaagtg |
49599139 |
T |
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