View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12244_low_1 (Length: 486)
Name: NF12244_low_1
Description: NF12244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12244_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 2e-87; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 1404181 - 1404010
Alignment:
| Q |
19 |
actattagtgtttttatttgaagtttgaaaaaattgtttccttgagaacaaaagtgatgatgggaaatgagattatcttcttttctggctaagattttga |
118 |
Q |
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| T |
1404181 |
actatttgtgtttttatttgaagtttgaaaaaattgtttccttgagaacaaaagtgatgatgggaaatgagattatcttcttttttggctaagattttga |
1404082 |
T |
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| Q |
119 |
gccaaccactgaacaagttcaaaacaagttatttcattggttagtttttaaatctgttaatatggttattag |
190 |
Q |
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| T |
1404081 |
gccaaccactgaacaagttcaaaacaagttatttcattggttagtttttaaatctgttaatatggttattag |
1404010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 213 - 303
Target Start/End: Complemental strand, 1403982 - 1403892
Alignment:
| Q |
213 |
gtgtgtatgattgaacatgagtacatgagcatgctaagatttgaggcaatgagtaattcaaagctgtttgattggttagttagttatctgt |
303 |
Q |
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| T |
1403982 |
gtgtgtatgaatgaacatgagtacatgagcatgctaagatttgaggcaatgagtaattcaaagctgtttgatcggttagttagttatctgt |
1403892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 421 - 473
Target Start/End: Complemental strand, 1403694 - 1403642
Alignment:
| Q |
421 |
gagatcttcctacaattatgtttttgactttacttgaggatttgatctctgct |
473 |
Q |
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| T |
1403694 |
gagatcttcccacaattatgtttttgactttacttgaggatttgatctctgct |
1403642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 370
Target Start/End: Complemental strand, 1403890 - 1403848
Alignment:
| Q |
330 |
taaattttctgtattataatcatatggc--tatgtgtttctga |
370 |
Q |
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| T |
1403890 |
taaattttctgtattataatcatatggctatatgtgtttctga |
1403848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 406
Target Start/End: Complemental strand, 1403745 - 1403711
Alignment:
| Q |
372 |
gatttaatgtttatttcacttcaactaattatgac |
406 |
Q |
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| T |
1403745 |
gatttaatgtttatttcacttcaactaattgtgac |
1403711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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