View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12245_high_3 (Length: 318)
Name: NF12245_high_3
Description: NF12245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12245_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 48926807 - 48927113
Alignment:
| Q |
1 |
gtaatggataattcaattctatattttacactacactacgctgcaaaagaagaaggaaaactctcttcttgaaccaaattcttaaccttaaccctcactg |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
48926807 |
gtaatggataattcaattctaaattttacactacact-----gcaaaagaagaaggaaaactctcttcttgaaccaaattcttaacattaaccctcactg |
48926901 |
T |
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| Q |
101 |
caccactgagtttctgcacacttttggcaatcccaaacatttcaccttctccaatttctctttttgatgaaaccaaaacaacttgagttccacataattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48926902 |
caccactgagtttctgcacacttttggcaatcccaaacatttcatcttctccaatttctctttttgatgaaaccaaaacaacttgagttccacataattc |
48927001 |
T |
|
| Q |
201 |
atcataaatcctcatgaactcttccaacacttcctcaacaattcccagcttgttcttcttcatcagcatcttcaccaaagcaaccacatgcccttcaaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48927002 |
atcataaatcctcatgaactcttccaacacttcctcaacaattcccagcttgttcttcttcatcagcatcttcaccaaagcaaccacatgcccttcaaat |
48927101 |
T |
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| Q |
301 |
tttctctgctcc |
312 |
Q |
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|||||||||||| |
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| T |
48927102 |
tttctctgctcc |
48927113 |
T |
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