View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12246_low_1 (Length: 758)
Name: NF12246_low_1
Description: NF12246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12246_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 693; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 693; E-Value: 0
Query Start/End: Original strand, 11 - 739
Target Start/End: Original strand, 39231028 - 39231755
Alignment:
| Q |
11 |
cagagactcttctatggaaagcacttaaccataatggaaaaacagtgttcatcgatgaaaatcggtattatgctgcatatatagaagaaaaacaccctga |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39231028 |
cagagactcttctatggaaagcacttaaccataatggaaaaacagtgttcatcgatgaaaatcggtattatgctgcatatatagaagaaaaacaccctga |
39231127 |
T |
|
| Q |
111 |
gattgatgcttatgatgttcaatatacaacaaaaaggagtgagatgaaagagcttatagcttcagctaaagaacatgtagcaaatgagtgcaagccagtg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39231128 |
gattgatgcttatgatgttcaatatacaacaaaaaggagtgagatgaaagagcttatagcttcagctaaagaacatgtagcaaatgagtgcaagccagtg |
39231227 |
T |
|
| Q |
211 |
cagaatcttttattctcggattgcaaacttggaattaatgatcttccaaaccatgtgtatgaagttgattgggatgtaatattggttgacgggcctcgtg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39231228 |
cagaatcttttattctcggattgcaaacttggaattaatgatcttccaaaccatgtgtatgaagttgattgggatgtaatattggttgacgggcctcgtg |
39231327 |
T |
|
| Q |
311 |
gggattggccggaagctcccgggagaatgtcggcgatatttacagccggggtgttggctagaagtaagaaaggtggtaacccaaagactcatgtgttttt |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39231328 |
gggattggccggaagctcccgggagaatgtcggcgatatttaccgccggggtgttggctagaagtaagaaaggtggtaacccaaagactcatgtgttttt |
39231427 |
T |
|
| Q |
411 |
gcatgatttttctggtgaagttgaacaagtttgtgggaatgagtttttgtgtaaagagaatttgttggaagcaagtgagagtatggggcattatgttttg |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39231428 |
gcatgatttttctggtgaagttgaacaagtttgtgggaatgagtttttgtgtaaagagaatttgttggaagcaagtgagagtatggggcattatgttttg |
39231527 |
T |
|
| Q |
511 |
gaaaggatgaatgagagcagtgttcagtattgtaaagggtcttcttcatccacataatgcatctatgaaatcatagaaatcgcaatgacaccatgatttt |
610 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39231528 |
gaaaggatgaatgagagcagtgttcagtattgtaaagggtcttcttcatccacctaatgcatctatgaaatcatagaaatcgcgatgacaccatgatttt |
39231627 |
T |
|
| Q |
611 |
gtgaaggtccaaaatgtagtttttatcaaaatcacagtggctcgacgtgactatgcaaaagacaattcaaacatgcatttaattagttgctccttctctt |
710 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
39231628 |
gtcgaggtccaaaatgtagtttttatcaaaatcacggtggctcgacgtgactatacaaaagacaattcaaacatgca-ttaattagttgctccttctctt |
39231726 |
T |
|
| Q |
711 |
ccatttaaatttctcataaatgtcttagt |
739 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
39231727 |
ccatttaaatttctcataaatgtcttagt |
39231755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 319 - 381
Target Start/End: Complemental strand, 33371872 - 33371810
Alignment:
| Q |
319 |
ccggaagctcccgggagaatgtcggcgatatttacagccggggtgttggctagaagtaagaaa |
381 |
Q |
| |
|
|||| |||||| ||||||||||||||||| |||||||| | ||||||||||| || |||||| |
|
|
| T |
33371872 |
ccggcagctccggggagaatgtcggcgatctttacagcagcagtgttggctaggagcaagaaa |
33371810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University