View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12247_high_2 (Length: 292)
Name: NF12247_high_2
Description: NF12247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12247_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 22 - 282
Target Start/End: Complemental strand, 44817251 - 44816991
Alignment:
| Q |
22 |
gtgccacccaagaaattgttccataggtagtttgcaagctgtgaggcgtcgtaagacgagtagagagagtagcttccagtgccacctccgatagagagca |
121 |
Q |
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| T |
44817251 |
gtgccacccaagaaattgttccataggtagtttgcaagctgtgaggcgtcgtaagacgagtagagagagtagcttccagtgccacctccgatagagagca |
44817152 |
T |
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| Q |
122 |
acactttgatgcctttgctttgacaagtttggatatctttactaaagtttgtgcagccgtttgaggctggatcacaatggcctgcaaggtttagagttgg |
221 |
Q |
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| T |
44817151 |
acactttgatgcctttgctttgacaagtttggatatctttactaaagtttgtgcagccgtttgaggctggatcacaatggcctgcaaggtttagagttgg |
44817052 |
T |
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| Q |
222 |
attttggccattgccaaaagtggatagaaaagctatgtttacaaatttgtagttgtctgtg |
282 |
Q |
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| T |
44817051 |
attttggccattgccaaaagtggatagaaaagctatgtttacaaatttgtagttgtttgtg |
44816991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 22 - 282
Target Start/End: Complemental strand, 44834608 - 44834348
Alignment:
| Q |
22 |
gtgccacccaagaaattgttccataggtagtttgcaagctgtgaggcgtcgtaagacgagtagagagagtagcttccagtgccacctccgatagagagca |
121 |
Q |
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| T |
44834608 |
gtgccacccaagaaattgttccataggtaatttgcaacctgcgtggcatcatcagctgaggaaagagagtagcttccggcaccacctccgagagatagca |
44834509 |
T |
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| Q |
122 |
acactttgatgcctttgctttgacaagtttggatatctttactaaagtttgtgcagccgtttgaggctggatcacaatggcctgcaaggtttagagttgg |
221 |
Q |
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| T |
44834508 |
acactttgatgcctttgctttgacaagtttgaatttcactactaaactttgtgcaaccgtttgaggctggatcacaatggccagcaaggtttagagttgg |
44834409 |
T |
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| Q |
222 |
attttggccattgccaaaagtggatagaaaagctatgtttacaaatttgtagttgtctgtg |
282 |
Q |
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| T |
44834408 |
agtttggccattgccaaaagtggatagaaaagctatgtttacaaattggtagttgtttgtg |
44834348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 127 - 284
Target Start/End: Original strand, 23396549 - 23396704
Alignment:
| Q |
127 |
ttgatgcctttgctttgacaagtttggatatctttactaaagtttgtgcagccgtttgaggctggatcacaatggcctgcaaggtttagagttg-gattt |
225 |
Q |
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| T |
23396549 |
ttgatgcctttgctttgacaagtttggatatctttactaaagtttctgcagccatttgtggatggatcacaatggcctgcaaggttt--agttgtgattt |
23396646 |
T |
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| Q |
226 |
tggccattgccaaaagtggatagaaaagctatgtttacaaatttgtagttgtctgtgct |
284 |
Q |
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| T |
23396647 |
tggccattgcc-aaagtggatagaaaagctatgtttataaattggtagttgtttgtgct |
23396704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 22 - 144
Target Start/End: Original strand, 17571053 - 17571175
Alignment:
| Q |
22 |
gtgccacccaagaaattgttccataggtagtttgcaagctgtgaggcgtcgtaagacgagtagagagagtagcttccagtgccacctccgatagagagca |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||| |||||||||||||||| ||| ||| ||||| |||||| |
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| T |
17571053 |
gtgccacccaagaaattgttccataggtagtttgcaagctgcgtggtgtcgtaagacgagttgagagagtagcttccaacgccgccttcgataaagagca |
17571152 |
T |
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| Q |
122 |
acactttgatgcctttgctttga |
144 |
Q |
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| T |
17571153 |
acactttgatgcctttgctttga |
17571175 |
T |
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