View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12247_low_1 (Length: 412)
Name: NF12247_low_1
Description: NF12247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12247_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 5 - 399
Target Start/End: Original strand, 3456084 - 3456478
Alignment:
| Q |
5 |
aatagtcctttcgtctctcactgcagagtagctacttagggtttcaacttacaactcatctttaaatactacggtccagtttacgacactgagtcggcct |
104 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||| ||||||||||| |||||| ||||| ||||||||||||||| |
|
|
| T |
3456084 |
aatagtcctttcgtctctgactgcagagtagctacttaggttttcaaattacaactcatgtttaaatactatggtccactttacaacactgagtcggcct |
3456183 |
T |
|
| Q |
105 |
tttagattgaaaaattcataacatttgcaaaaacacatttcgcatccaaaatgatgaatcaactaaaacttcaatagaaaatatataatttaactattac |
204 |
Q |
| |
|
|| | |||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||| |
|
|
| T |
3456184 |
ttaaaattgaaaaattcattacatttgcaaaaacaaatttagcatccaaaatgatgaatcaactaaaacttaaatagaagatatataatttaaccattac |
3456283 |
T |
|
| Q |
205 |
acatgacatggaagtattgaattatatgtcatgctatacaccaagattttttgcaagtaatgtcaggtaaagaagaaataaacacaatactcactgtaat |
304 |
Q |
| |
|
|||| |||||||||| |||||||||||| || || |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3456284 |
acataacatggaagttttgaattatatgacaagccatacaccaagtttttttgcaagtaatatcaggtaaagaagaaataaacacaatactcactgtaat |
3456383 |
T |
|
| Q |
305 |
atacctgatggccaataacaacaggtgcattttgaagtataaaatgtaagaaattatctgctctcttaagaatctgtgacagttcctccacaggt |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3456384 |
atacctgatggccaataacaacaggtgcattttgaagtataaaatgtaagaaattatctgctctcttaagaatctgtgacagttcctccacaggt |
3456478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 275 - 399
Target Start/End: Original strand, 3480741 - 3480865
Alignment:
| Q |
275 |
agaagaaataaacacaatactcactgtaatatacctgatggccaataacaacaggtgcattttgaagtataaaatgtaagaaattatctgctctcttaag |
374 |
Q |
| |
|
|||||||| |||| ||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3480741 |
agaagaaagaaactaaatactcgttgtagtatacctgatggcctataacaacaggtgcattttgaagtataaaatgtaagaaattatctgctctcttaag |
3480840 |
T |
|
| Q |
375 |
aatctgtgacagttcctccacaggt |
399 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
3480841 |
aatctgtgacagttcctccacaggt |
3480865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 308 - 399
Target Start/End: Complemental strand, 48694426 - 48694335
Alignment:
| Q |
308 |
cctgatggccaataacaacaggtgcattttgaagtataaaatgtaagaaattatctgctctcttaagaatctgtgacagttcctccacaggt |
399 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||| ||||| || || ||||| || |||||| |
|
|
| T |
48694426 |
cctgatggccaataacaacaggagcattttggagtataaaatgcaagaaattatctgctctcttcagaatttgagagagttcttcaacaggt |
48694335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University