View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12248_high_2 (Length: 387)
Name: NF12248_high_2
Description: NF12248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12248_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 16 - 381
Target Start/End: Original strand, 44145184 - 44145549
Alignment:
| Q |
16 |
gattcagccatcagaggagatagtgtaatctcttccttccttgtagttgtggaggacacagaacctgcataactgcgcactagaaagccataaccagtac |
115 |
Q |
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| T |
44145184 |
gattcaaccatcagaggagatagtgtaatatcttccttccttgtagctgcgaaggccacagaacctgcataactgcgcactagaaagccataaccagtac |
44145283 |
T |
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| Q |
116 |
aacattcaaaacaaccgacaccaacattaattttcagcctctgtacaggtagagtaatggagtagccacatttggacagagtgtttccagttttacaccc |
215 |
Q |
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| T |
44145284 |
aacattcaaaacaaccaacaccaacattaattttcagcctctgtacaggtagagtaatggagtagccacatttggacagagtgtttccagttttacaccc |
44145383 |
T |
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| Q |
216 |
tttcttgctagattaattcggtcaggactcgggaagatattcatgtctggtatctaaaggaaattcgtcacactattaagtacagtggctctccacactt |
315 |
Q |
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| T |
44145384 |
tttcttgctagattaattcagtcaggactcgggaagatattcatgtctggtatctaaaggaaattcgtcacactattaagtacagtggctctccacactt |
44145483 |
T |
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| Q |
316 |
ccttccaaaggtcttggcttcttcttccagatgattcaggagcatctttgctcttagtgtctctca |
381 |
Q |
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| T |
44145484 |
ccttccaaaggtcttggcttcttctgtaggatgactcgagagcatcttcgctcctagtgtctctca |
44145549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 187 - 381
Target Start/End: Complemental strand, 44156610 - 44156423
Alignment:
| Q |
187 |
ttggacagagtgtttccagttttacaccctttcttgctagattaattcggtcaggactcgggaagatattcatgtctggtatctaaaggaaattcgtcac |
286 |
Q |
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| T |
44156610 |
ttggacaaagtgtttccaattttacaacctttctttctagattaatttggtc-------gggaatatatttatgtctggtatctaaaggaaattcgtcac |
44156518 |
T |
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| Q |
287 |
actattaagtacagtggctctccacacttccttccaaaggtcttggcttcttcttccagatgattcaggagcatctttgctcttagtgtctctca |
381 |
Q |
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| T |
44156517 |
actattaagtacagtggctctccacacttccttccaaaggtcttggcttcttctgtaggatgactcgagagcatcttcgctcctagtgtctctca |
44156423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 168
Target Start/End: Complemental strand, 44158164 - 44158099
Alignment:
| Q |
103 |
ccataaccagtacaacattcaaaacaaccgacaccaacattaattttcagcctctgtacaggtaga |
168 |
Q |
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| T |
44158164 |
ccataaccagtacaatattcaaaacaatcagcatcagcattagttttcagcctatgtacaggtaga |
44158099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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