View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12248_high_3 (Length: 350)
Name: NF12248_high_3
Description: NF12248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12248_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 4938111 - 4938447
Alignment:
| Q |
1 |
tcggctaagtgtgtagccatttgaattgatgaaactatgttgaagggttaggaattccaaatagaagatgtagtagttaaaatagatgatagatatagga |
100 |
Q |
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| T |
4938111 |
tcggctaagtgtgtagccatttgaattgatgaaactatgttgaagggttaggaattccaaatagaagatgtagtagttaaaatagatgatagatatagga |
4938210 |
T |
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| Q |
101 |
caacatatctgaaagcagccataaaggatgctttggaaatttatgacctcattttttataggatacaaactctaaaaattgaaaaaacacccttcttata |
200 |
Q |
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| T |
4938211 |
caacatatctgaaagcagccataaaggatgctttggaaatttatgacctcattttttatagaatacaaactctaaaaattgaaaaaacacccttcttata |
4938310 |
T |
|
| Q |
201 |
atttaaatactaaccactcaatgcaacctttttcttttattttactattatggtagtttaccaaataagtatagtagatggtaaagcttgattagatgtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4938311 |
atttaaatactaaccactcaatgcaacctttttcttttcttttactattatggtagtttaccaaataagtatagtagatggtaaagcttgattagatgtt |
4938410 |
T |
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| Q |
301 |
actgtcgttacatggttattaaattcattttgatatt |
337 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
4938411 |
actgtcgttacatggttattaaattcattttgatatt |
4938447 |
T |
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