View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12248_high_4 (Length: 339)
Name: NF12248_high_4
Description: NF12248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12248_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 20629136 - 20628812
Alignment:
| Q |
1 |
gtttagaattagaaggcttcataacatgaagaagaactatagtatcctgattctgaacagtgtgagtaagtgcccattgcaaagcacctttagcttcaaa |
100 |
Q |
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| T |
20629136 |
gtttagaattagaaggcttcatgacatgaagaagaactatagtatcctgattctgaacagtgtgagtaagtgcccattgcaaagcacctttggcttcaaa |
20629037 |
T |
|
| Q |
101 |
actagaatcaatcacaatcataatcttccgactaactacggatccttgtttcacaccatcgtcaaatttctcctcgcaaacactgcatgaattctcggta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
20629036 |
actagaatcaatcacaatcataatcttccgactaactacggatccttgtttcacaccatcgtcaaatttctcctcgcaaacactgcatgaattctcagta |
20628937 |
T |
|
| Q |
201 |
attttctgatcaattttagcatcatcacttttatcatgcttggcttgtatagttggcgaacgcaccctcgcatgaggcctaattcgattcaagcaaaaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20628936 |
attttctgatcaattttagcatcatcacttttatcatgcttggcttgtatagttggcgaacgcaccctcgcatgaggcctaattcgattcaagcaaaaac |
20628837 |
T |
|
| Q |
301 |
ctggtaaccttgctcctctcttgcc |
325 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
20628836 |
ctggtaaccttgctcctctcttgcc |
20628812 |
T |
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