View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12248_high_6 (Length: 323)
Name: NF12248_high_6
Description: NF12248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12248_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 3219029 - 3218793
Alignment:
| Q |
1 |
aagcgcgcgttacaaaatatattaaacaatgtgttaacacttaacaccattcctgtttcaatattcctctatatagcatcattttcaaacttcaaagtac |
100 |
Q |
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| T |
3219029 |
aagcgcgcgttacaaaatatattaaacaatgtgttaacac-------cattcctgttttaatattcctctatatagcatcattttcaaacttcaaagtac |
3218937 |
T |
|
| Q |
101 |
attttggtcttgcttttagtctaaatctctttaacaatggaggtaacaagggttcttgtagacggtggcagtgggaacggatgattgaaagaagagatag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3218936 |
attttggtcttgcttttagtctaaatctctttaacaatggaggtaacaagggttcttgtagacggtggcagtgggaacgaatgattgaaagaagagatag |
3218837 |
T |
|
| Q |
201 |
ttcagtaatctgataccatataacaaatatgtaatgacctattc |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3218836 |
ttcagtaatctgataccatataacaaatatgtaatgacctattc |
3218793 |
T |
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