View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12248_high_7 (Length: 310)
Name: NF12248_high_7
Description: NF12248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12248_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 4121318 - 4121074
Alignment:
| Q |
1 |
tttgggaccaccacatcacaacaattgcaattgtgtggcatcaactacatttttccacaattttcctcaatatcaaagatcaggtgttattgctagttgg |
100 |
Q |
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| T |
4121318 |
tttgggaccaccacatcacaacaattgcaattgtgtggcatcaactacatttttccacaattttcctcaatatcaaagatcaggtgttattgctagttgg |
4121219 |
T |
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| Q |
101 |
cagtcttgtgactgcccccacaatttcaaaccttcgcgtctctgctcaggttgtgctcttgtttttgctcaaaattttattatagttgtacacaaatcta |
200 |
Q |
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| T |
4121218 |
cagtcttgtgactgcccccacaatttcaaaccttcacgtctctgctcaggttgtgctcttgtttttgctcaaaattttattatagttgtacacaaatcta |
4121119 |
T |
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| Q |
201 |
tcaagctcccttagtcttagcatgcaaaatattaatgtcacttca |
245 |
Q |
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| T |
4121118 |
tcaagctcccttagtcttagcatgcaaaatattaatgtcacttca |
4121074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 288
Target Start/End: Original strand, 4364176 - 4364285
Alignment:
| Q |
185 |
gttgtacacaaatctatcaagctccctta--gtcttagcatgcaaaatattaatgt-cacttcatttttatca---tactgggaaagtgctgaatttatt |
278 |
Q |
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| T |
4364176 |
gttggacacaaatctatcaagcacccaaagggtcttagtatgcaaaatattattgtccacttcattttcatcaacctattgggaaagtactgaatttgtt |
4364275 |
T |
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| Q |
279 |
ttctcaatga |
288 |
Q |
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| T |
4364276 |
ttcttaatga |
4364285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 81
Target Start/End: Original strand, 4364004 - 4364075
Alignment:
| Q |
10 |
accacatcacaacaattgcaattgtgtggcatcaactacatttttccacaattttcctcaatatcaaagatc |
81 |
Q |
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| T |
4364004 |
accacatcacaacaatcacaattgtgtcgcatcaacctcatttttcttcagttttccttaacatcaaagatc |
4364075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 30813178 - 30813124
Alignment:
| Q |
156 |
ctcttgtttttgctcaaaattttattatagttgtacacaaatctatcaagctccc |
210 |
Q |
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| T |
30813178 |
ctcttgtttttgctcaaacttttcttataattgagcacaaatcgatcaagctccc |
30813124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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