View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12248_high_8 (Length: 307)
Name: NF12248_high_8
Description: NF12248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12248_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 42990889 - 42990598
Alignment:
| Q |
1 |
agtttgatttgaatgaatttagatggaaaaaagtactacgtacatagtaagcagtgacggttccagcagagtttccagcaaccaatttgagttgcatatc |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42990889 |
agtttgatttgaatgaatt-agatggaaaaaagtactacgtacatagtaagcagtgacggttccagcagagtttccagcaaccagtttgagttgcatatc |
42990791 |
T |
|
| Q |
101 |
aattctaccgaataagtactcttccttggactggaagccagagccggagactttgtcgagagaaagcgaaagaagctgaccaccgttgaatatcttagca |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
42990790 |
aattctaccgaataagtactctttcttggactggaagccagagccggagactttgtcgagagaaagtgaaagaagctgaccaccgttgaatgtcttagca |
42990691 |
T |
|
| Q |
201 |
cggtgatcaccccatgttagatcaaaatcttggtagaaatttgcacaacatgtagctatcaaggagctaactatcatagctccaatcagcata |
293 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42990690 |
cggtgatcgccccatgttagatcaaaatcttggtagaaatttgcacaacatgtagctatcaaggagctaactatcatagctccaatcagcata |
42990598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 45 - 239
Target Start/End: Complemental strand, 35016439 - 35016245
Alignment:
| Q |
45 |
tagtaagcagtgacggttccagcagagtttccagcaaccaatttgagttgcatatcaattctaccgaataagtactcttccttggactggaagccagagc |
144 |
Q |
| |
|
|||||||||||||| || ||||||||||| |||||||| | || || |||||||||||||| || |||| ||||||| ||| || | ||||||||||| |
|
|
| T |
35016439 |
tagtaagcagtgacagtgccagcagagttgccagcaacaagcttaagctgcatatcaattctcccaaataggtactctctctttgatttgaagccagagc |
35016340 |
T |
|
| Q |
145 |
cggagactttgtcgagagaaagcgaaagaagctgaccaccgttgaatatcttagcacggtgatcaccccatgttagatcaaaatcttggtagaaa |
239 |
Q |
| |
|
| ||||||||||| || ||||| || ||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
35016339 |
cagagactttgtcaagggaaagtgatagaagttgaccaccattgaatatcttagcacggttatcaccccatgttagatcaaagtcttggtagaaa |
35016245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 37 - 295
Target Start/End: Original strand, 38218909 - 38219167
Alignment:
| Q |
37 |
tacgtacatagtaagcagtgacggttccagcagagtttccagcaaccaatttgagttgcatatcaattctaccgaataagtactcttccttggactggaa |
136 |
Q |
| |
|
||||||| ||||||||||| || ||||||||||| ||||||||||| | ||| |||||||||||||||||||| ||||| ||||||| |||||| ||||| |
|
|
| T |
38218909 |
tacgtacgtagtaagcagtaacagttccagcagaatttccagcaacaagtttaagttgcatatcaattctaccaaataaatactctttcttggattggaa |
38219008 |
T |
|
| Q |
137 |
gccagagccggagactttgtcgagagaaagcgaaagaagctgaccaccgttgaatatcttagcacggtgatcaccccatgttagatcaaaatcttggtag |
236 |
Q |
| |
|
||||||||| || ||| || |||||||| || ||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||||| | |
|
|
| T |
38219009 |
gccagagccagaagttttatcaagagaaagagatagaagttgaccaccattgaatatcttagcacggtggtcaccccaagttagatcaaagtcttggttg |
38219108 |
T |
|
| Q |
237 |
aaatttgcacaacatgtagctatcaaggagctaactatcatagctccaatcagcatatt |
295 |
Q |
| |
|
|| || ||| |||||||||||| ||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
38219109 |
aagttagcagaacatgtagctaccaaggagctaattatcataactccaatcagcatatt |
38219167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 41 - 293
Target Start/End: Original strand, 38214692 - 38214944
Alignment:
| Q |
41 |
tacatagtaagcagtgacggttccagcagagtttccagcaaccaatttgagttgcatatcaattctaccgaataagtactcttccttggactggaagcca |
140 |
Q |
| |
|
||||||||||||||| || ||||||||||| ||||||||||| | ||| |||||||||||||||||||| ||||| ||||||| |||||| ||||||||| |
|
|
| T |
38214692 |
tacatagtaagcagtaacagttccagcagaatttccagcaacaagtttaagttgcatatcaattctaccaaataaatactctttcttggattggaagcca |
38214791 |
T |
|
| Q |
141 |
gagccggagactttgtcgagagaaagcgaaagaagctgaccaccgttgaatatcttagcacggtgatcaccccatgttagatcaaaatcttggtagaaat |
240 |
Q |
| |
|
||||| || ||| || |||||||| || ||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||||| ||| | |
|
|
| T |
38214792 |
gagccagaagttttatcaagagaaagagatagaagttgaccaccattgaatatcttagcacggtggtcaccccaagttagatcaaagtcttggttgaagt |
38214891 |
T |
|
| Q |
241 |
ttgcacaacatgtagctatcaaggagctaactatcatagctccaatcagcata |
293 |
Q |
| |
|
| ||| |||||||||||| ||||||||||| |||||| |||||||||||||| |
|
|
| T |
38214892 |
tagcagaacatgtagctaccaaggagctaattatcatgactccaatcagcata |
38214944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 53494838 - 53494776
Alignment:
| Q |
41 |
tacatagtaagcagtgacggttccagcagagtttccagcaaccaatttgagttgcatatcaat |
103 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||| || | ||||| ||||||||||| |
|
|
| T |
53494838 |
tacatagtaagcagtgaccgttcctgcagagtttccaggtacaagcttgagctgcatatcaat |
53494776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 53501937 - 53501885
Alignment:
| Q |
51 |
gcagtgacggttccagcagagtttccagcaaccaatttgagttgcatatcaat |
103 |
Q |
| |
|
|||||||| || |||||||||||||||| || | |||||||||||||||||| |
|
|
| T |
53501937 |
gcagtgacagtgccagcagagtttccagggacaagtttgagttgcatatcaat |
53501885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University