View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12248_low_1 (Length: 207)
Name: NF12248_low_1
Description: NF12248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12248_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 2694655 - 2694828
Alignment:
| Q |
17 |
agaaacaagaatattgaagctagggtttggcttggcaagaagattgaggcaggggctgaatgtaaagtataagtgattaatagcttatattgaggtaaaa |
116 |
Q |
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| T |
2694655 |
agaaacaagaatattgaagctagggtttggcttggcaagaagattgaggcaggggctgaatgtaa-gtataagtgattaatagcttaaattgaggtaaaa |
2694753 |
T |
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| Q |
117 |
gtgattattttgagaagaaattcaagttatgttgattgattagatgtataagttgttactgactttgggattctg |
191 |
Q |
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| T |
2694754 |
gtgattattttgagaagaaattcaagttatgttgattgattagatgtataagttgttactgactttgggattctg |
2694828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 34 - 174
Target Start/End: Original strand, 31330575 - 31330727
Alignment:
| Q |
34 |
agctagggtttggcttggcaagaagattgaggcaggggctgaatgta------------aagtataagtgattaatagcttatattgaggtaaaagtgat |
121 |
Q |
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| T |
31330575 |
agctagggtttggcttggcaagaagatagaggcaggggctgaatgttgaaactgaatgtaagtataagtgattaatagcttaaattgaggtaaaagtgat |
31330674 |
T |
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| Q |
122 |
tattttgagaagaaattcaagttatgttgattgattagatgtataagttgtta |
174 |
Q |
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| T |
31330675 |
tattttgagaagaaatttaagttatgttgattcattagaagtataagctgtta |
31330727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 34 - 174
Target Start/End: Original strand, 31337296 - 31337448
Alignment:
| Q |
34 |
agctagggtttggcttggcaagaagattgaggcaggggctgaatgta------------aagtataagtgattaatagcttatattgaggtaaaagtgat |
121 |
Q |
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| T |
31337296 |
agctagggtttggcttggcaagaagatagaggcaggggctgaatgttgaaactgaatgtaagtataagtgattaatagcttaaattgaggtaaaagtgat |
31337395 |
T |
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| Q |
122 |
tattttgagaagaaattcaagttatgttgattgattagatgtataagttgtta |
174 |
Q |
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||||||||||||||||| |||||||||||||| |||||| ||||||| ||||| |
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| T |
31337396 |
tattttgagaagaaatttaagttatgttgattcattagaagtataagctgtta |
31337448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 17 - 190
Target Start/End: Complemental strand, 5559314 - 5559142
Alignment:
| Q |
17 |
agaaacaagaatattgaagctagggtttggcttggcaagaagattgaggcaggggctgaatgtaaagtataagtgattaatagcttatattgaggtaaaa |
116 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
5559314 |
agaaacaagaatattgaagctagggtttggcttggcaagaagattgaggcaggggctgaatgtaa-gtataagtgattaatagcttaaattgaggtaaaa |
5559216 |
T |
|
| Q |
117 |
gtgattattttgagaagaaattcaagttatgttgattgattagatgtataagttgttactgactttgggattct |
190 |
Q |
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| T |
5559215 |
gtgattattttgagaagaaattcaagttatgttgattgattagatgtataagttgttactgactttgggattct |
5559142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 25637223 - 25637285
Alignment:
| Q |
122 |
tattttgagaagaaattcaagttatgttgattgattagatgtataagttgttactgactttgg |
184 |
Q |
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||||||||||||||||| |||||||||||||| |||| | | ||||| ||||| || |||||| |
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| T |
25637223 |
tattttgagaagaaatttaagttatgttgattaattataagcataagctgttattgcctttgg |
25637285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 64
Target Start/End: Original strand, 34150019 - 34150049
Alignment:
| Q |
34 |
agctagggtttggcttggcaagaagattgag |
64 |
Q |
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| T |
34150019 |
agctagggtttggcttggcaagaagattgag |
34150049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 19357882 - 19358054
Alignment:
| Q |
17 |
agaaacaagaatattgaagctagggtttggcttggcaagaagattgaggcaggggctgaatgtaaagtataagtgattaatagcttatattgaggtaaaa |
116 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
19357882 |
agaaacaagaatattgaagctagggtttggcttggcaagaagattgaggcaggggctgaatgtaa-gtataagtgattaatagcttaaattgaggtaaaa |
19357980 |
T |
|
| Q |
117 |
gtgattattttgagaagaaattcaagttatgttgattgattagatgtataagttgttactgactttgggattct |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19357981 |
gtgattattttgagaagaaattcaagttatgttgattgattagatgtataagttgttactgactttgggattct |
19358054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 37367629 - 37367801
Alignment:
| Q |
17 |
agaaacaagaatattgaagctagggtttggcttggcaagaagattgaggcaggggctgaatgtaaagtataagtgattaatagcttatattgaggtaaaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
37367629 |
agaaacaagaatattgaagctagggtttggcttggcaagaagattgaggcaggggctgaatgtaa-gtataagtgattaatagcttaaattgaggtaaaa |
37367727 |
T |
|
| Q |
117 |
gtgattattttgagaagaaattcaagttatgttgattgattagatgtataagttgttactgactttgggattct |
190 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37367728 |
gtgattattttgagaagcaattcaagttatgttgattgattagatgtataagttgttactgactttgggattct |
37367801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 17 - 190
Target Start/End: Complemental strand, 41529943 - 41529771
Alignment:
| Q |
17 |
agaaacaagaatattgaagctagggtttggcttggcaagaagattgaggcaggggctgaatgtaaagtataagtgattaatagcttatattgaggtaaaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
41529943 |
agaaacaagaatattgaagctagggtttggcttggcaagaagattgaggcaggggctgaatgtaa-gtataagtgattaatagcttaaattgaggtaaaa |
41529845 |
T |
|
| Q |
117 |
gtgattattttgagaagaaattcaagttatgttgattgattagatgtataagttgttactgactttgggattct |
190 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41529844 |
gtgattattttgggaagaaattcaagttatgttgattgattagatgtataagttgttactgactttgggattct |
41529771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 3e-25; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 34455264 - 34455349
Alignment:
| Q |
17 |
agaaacaagaatattgaagctagggtttggcttggcaagaagattgaggcaggggctgaatgtaaagtataagtgattaatagctta |
103 |
Q |
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| T |
34455264 |
agaaacaaggatattgaagctagggtttggcttggcaagaagattgaagcaagggctgactgt-aagtataagtgattcatagctta |
34455349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 105 - 184
Target Start/End: Complemental strand, 4342720 - 4342641
Alignment:
| Q |
105 |
attgaggtaaaagtgattattttgagaagaaattcaagttatgttgattgattagatgtataagttgttactgactttgg |
184 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||||||||| |||| | | ||||| ||||| || |||||| |
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| T |
4342720 |
attgaggtaaaagtgcttattttgagaagaaatttaagttatgttgattaattataagcataagctgttattgcctttgg |
4342641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 3077448 - 3077524
Alignment:
| Q |
107 |
tgaggtaaaagtgattattttgagaagaaattcaagttatgttgattgattagatgtataagttgttactgactttg |
183 |
Q |
| |
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|||||||||| |||||||||||||| | || |||||||||||| |||||||| | ||||||||||| || ||||| |
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| T |
3077448 |
tgaggtaaaaatgattattttgagatatagtttaagttatgttgaatgattagaagcataagttgttattgcctttg |
3077524 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 31662699 - 31662744
Alignment:
| Q |
34 |
agctagggtttggcttggcaagaagattgaggcaggggctgaatgt |
79 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31662699 |
agctagggtttggcttggcaagaagatagaggcaggggctgaatgt |
31662744 |
T |
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