View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12249_high_1 (Length: 345)
Name: NF12249_high_1
Description: NF12249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12249_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 17 - 335
Target Start/End: Original strand, 43967028 - 43967347
Alignment:
| Q |
17 |
tcattattaatatcataagttatgttgaatgttaatccagatgaacaattgtaaggatgaaggttgatgttgtccttgtttatagctgtatctattaatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43967028 |
tcattattaatatcataagttatgttgaatgttaatccagatgaacaattgtaaggatgaaggttgatgttgtccttgtttatagctgtatctattaatt |
43967127 |
T |
|
| Q |
117 |
aattatatcaacccatttttatgtatttattttaacggcatattaacgttgggggtaatacgttggtcattatattatttgacagcccgtgggtagttca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43967128 |
aattatatcaacccatttttatgtatttattttaacggcatattaacgttgggggtaatacgttggtcattatattatttgacagcccgtgggtagttca |
43967227 |
T |
|
| Q |
217 |
cattgaagaaaccacaaaatctgtgtacatatttcttctcctaaactgtgatgtactggttattcttcttttacatccataataattaatatttggatgg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43967228 |
cattgaagaaaccacaaaatctgtgtacatatttcttctcctaaactgtgatgtactgattattcttcttttacatccataataattaatatttggatgg |
43967327 |
T |
|
| Q |
317 |
ac-ttttgttgtcacaggtt |
335 |
Q |
| |
|
|| ||||||||||| ||||| |
|
|
| T |
43967328 |
actttttgttgtcataggtt |
43967347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University