View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12249_low_3 (Length: 295)
Name: NF12249_low_3
Description: NF12249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12249_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 41592234 - 41592516
Alignment:
| Q |
1 |
ttcccatttctgtattcgaggtctttgtttttcatcaaatgatgagagattgctgacacaataatctcttctatatagttactgagaaccattgtgtctt |
100 |
Q |
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| T |
41592234 |
ttcccatttctgtattcgaggtctttgtttttcatcaaatgatgagagattgctgacacaataatctcttctatatagttactgagaaccattgtgtctt |
41592333 |
T |
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| Q |
101 |
ccacacagatggaatccaagtcatcgcaatcaagatcattggctgcaagcacttccgtaatatgatttttattatcctgaacttgtatcatcttcatatc |
200 |
Q |
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| T |
41592334 |
ccacacagatggaatccaagtcatcgcaatcaagatcattggctgcaagcacttccgtaatatgatttttattatcctgaacttgtatcatcttcatatc |
41592433 |
T |
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| Q |
201 |
ctcttccaattgtgacttccagctgacgagatgtgattcatcttccggaggtctgatttctatatcgtacgggaagagcacag |
283 |
Q |
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| T |
41592434 |
ctcttccaattgtgacttccagctgacgagatgtgattcatcttccggaggtctgatttctatatcgtacgggaagagcacag |
41592516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 4 - 278
Target Start/End: Complemental strand, 2488936 - 2488662
Alignment:
| Q |
4 |
ccatttctgtattcgaggtctttgtttttcatcaaatgatgagagattgctgacacaataatctcttctatatagttactgagaaccattgtgtcttcca |
103 |
Q |
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| T |
2488936 |
ccatttctgtattcaggctctttgttcttcattatatgatacgaaattgctgacacgataatctcttctatatagttactgagaaccattgtgtctgcta |
2488837 |
T |
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| Q |
104 |
cacagatggaatccaagtcatcgcaatcaagatcattggctgcaagcacttccgtaatatgatttttattatcctgaacttgtatcatcttcatatcctc |
203 |
Q |
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| T |
2488836 |
cacagatggaatccaggtcatgacaatcaagatcattggctgctaacacttccatgatatggttcttgttatcttgaatctgtatcttcttcatatccgc |
2488737 |
T |
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| Q |
204 |
ttccaattgtgacttccagctgacgagatgtgattcatcttccggaggtctgatttctatatcgtacgggaagag |
278 |
Q |
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| T |
2488736 |
ttcaaattgagacttccagctgacaagacgagattcatcttctggtggtttgatttctatgttgtaagggaagag |
2488662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 156
Target Start/End: Original strand, 8842865 - 8842953
Alignment:
| Q |
68 |
cttctatatagttactgagaaccattgtgtcttccacacagatggaatccaagtcatcgcaatcaagatcattggctgcaagcacttcc |
156 |
Q |
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||||||| ||||||| |||||||||||||| | |||||||||||||| | ||||| |||||||| |||||||||||| |||||| |
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| T |
8842865 |
cttctatgtagttacaaagaaccattgtgtccgctacacagatggaatcaatgtcatgaatatcaagataattggctgcaaggacttcc |
8842953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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