View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12249_low_6 (Length: 229)
Name: NF12249_low_6
Description: NF12249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12249_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 6 - 207
Target Start/End: Original strand, 9003843 - 9004044
Alignment:
| Q |
6 |
aaggtttgctaggccttttgaatctactctcaacaacaatggtggttataacaatgaaaggttcatgaaacttccaaatttagaaagtccaaaatcaaca |
105 |
Q |
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| T |
9003843 |
aaggtttgctaggccttttgaatctactctcaacaacaatggtggttataacaatgaaaggttcatgaaacttccaaatttagaaagtccaaaatcaaca |
9003942 |
T |
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| Q |
106 |
agcatggagaacaatgagaacaacaatgatgggtatcatgcaattattcaagtagatatggctaatgaaaatgaaggatcattctctgatcatcatcatc |
205 |
Q |
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| T |
9003943 |
agcatggagaacaatgagaacaacaatgatgggtatcatgcaattattcaagtagatatggctaatgaaaatgaagggtcattctctgatcatcatcatc |
9004042 |
T |
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| Q |
206 |
at |
207 |
Q |
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|| |
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| T |
9004043 |
at |
9004044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 229
Target Start/End: Original strand, 9004040 - 9004075
Alignment:
| Q |
194 |
atcatcatcatcataacaacatggttaataatccat |
229 |
Q |
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| T |
9004040 |
atcatcatcatcataacaacatggttaataatccat |
9004075 |
T |
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