View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12249_low_7 (Length: 216)

Name: NF12249_low_7
Description: NF12249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12249_low_7
NF12249_low_7
[»] chr8 (22 HSPs)
chr8 (18-201)||(9519402-9519585)
chr8 (18-201)||(24995390-24995573)
chr8 (18-201)||(34389000-34389183)
chr8 (18-201)||(37986853-37987036)
chr8 (26-201)||(32066290-32066465)
chr8 (18-196)||(36630740-36630918)
chr8 (63-194)||(31207364-31207494)
chr8 (23-184)||(10248565-10248725)
chr8 (94-201)||(16457456-16457562)
chr8 (78-196)||(15821379-15821497)
chr8 (23-184)||(17657014-17657173)
chr8 (122-190)||(41893406-41893474)
chr8 (92-201)||(12898269-12898378)
chr8 (77-184)||(30236140-30236247)
chr8 (140-201)||(20138451-20138512)
chr8 (18-67)||(31210319-31210368)
chr8 (126-184)||(15906697-15906755)
chr8 (140-184)||(32945715-32945759)
chr8 (146-193)||(38577793-38577840)
chr8 (126-175)||(40531243-40531292)
chr8 (126-170)||(544376-544420)
chr8 (140-184)||(3679471-3679515)
[»] chr7 (35 HSPs)
chr7 (18-201)||(38306164-38306347)
chr7 (18-204)||(47325877-47326063)
chr7 (18-196)||(3419656-3419834)
chr7 (18-193)||(10244086-10244260)
chr7 (26-192)||(41089752-41089918)
chr7 (18-201)||(5860283-5860466)
chr7 (23-196)||(3867024-3867197)
chr7 (23-184)||(33435018-33435178)
chr7 (18-201)||(37794903-37795075)
chr7 (28-161)||(25160728-25160861)
chr7 (26-184)||(6716748-6716905)
chr7 (83-196)||(6584877-6584990)
chr7 (23-196)||(34389871-34390043)
chr7 (23-196)||(35745827-35745998)
chr7 (23-182)||(3478261-3478419)
chr7 (30-152)||(44755543-44755663)
chr7 (23-184)||(1320703-1320863)
chr7 (23-165)||(42533283-42533424)
chr7 (23-184)||(8745062-8745222)
chr7 (27-184)||(16954566-16954722)
chr7 (36-184)||(24324810-24324957)
chr7 (23-184)||(13311747-13311908)
chr7 (68-184)||(16828948-16829064)
chr7 (140-201)||(44353559-44353620)
chr7 (21-184)||(11379139-11379301)
chr7 (126-179)||(46262136-46262189)
chr7 (128-184)||(2613879-2613935)
chr7 (126-165)||(9349760-9349799)
chr7 (126-165)||(38485567-38485606)
chr7 (130-184)||(12480901-12480955)
chr7 (130-184)||(22568124-22568178)
chr7 (126-184)||(48058666-48058724)
chr7 (81-165)||(23983162-23983245)
chr7 (126-170)||(27993562-27993606)
chr7 (126-170)||(35206719-35206763)
[»] chr2 (22 HSPs)
chr2 (18-201)||(39338860-39339043)
chr2 (18-201)||(10524000-10524187)
chr2 (23-196)||(7874201-7874372)
chr2 (69-192)||(387128-387250)
chr2 (78-196)||(14405162-14405279)
chr2 (23-174)||(14106546-14106696)
chr2 (23-184)||(1269391-1269552)
chr2 (26-159)||(41086825-41086955)
chr2 (23-184)||(13337183-13337343)
chr2 (33-160)||(17105330-17105457)
chr2 (23-184)||(10173590-10173751)
chr2 (77-172)||(31902438-31902533)
chr2 (126-196)||(4471934-4472004)
chr2 (126-184)||(22885145-22885203)
chr2 (126-184)||(16959993-16960051)
chr2 (140-189)||(9560795-9560844)
chr2 (126-164)||(4162052-4162090)
chr2 (126-180)||(15126426-15126480)
chr2 (138-184)||(15723195-15723241)
chr2 (127-184)||(2062901-2062958)
chr2 (126-175)||(33788653-33788702)
chr2 (140-184)||(7695988-7696032)
[»] chr1 (24 HSPs)
chr1 (18-201)||(31585755-31585938)
chr1 (18-201)||(41920356-41920538)
chr1 (18-201)||(5389416-5389599)
chr1 (18-201)||(46692814-46692997)
chr1 (18-201)||(30685899-30686082)
chr1 (18-194)||(24449932-24450108)
chr1 (18-196)||(24684478-24684655)
chr1 (18-194)||(20113523-20113699)
chr1 (27-196)||(24658843-24659010)
chr1 (21-196)||(46814467-46814640)
chr1 (23-165)||(7857563-7857703)
chr1 (87-201)||(5459133-5459247)
chr1 (23-175)||(9313310-9313461)
chr1 (78-190)||(27031846-27031958)
chr1 (23-184)||(32864573-32864734)
chr1 (100-184)||(17033571-17033655)
chr1 (126-184)||(19598647-19598705)
chr1 (23-96)||(16147464-16147536)
chr1 (23-175)||(38544759-38544909)
chr1 (26-184)||(27102102-27102260)
chr1 (126-196)||(27905423-27905493)
chr1 (126-184)||(15840924-15840982)
chr1 (125-175)||(46603402-46603452)
chr1 (128-189)||(13987634-13987695)
[»] chr5 (16 HSPs)
chr5 (18-196)||(18593146-18593324)
chr5 (18-196)||(34378001-34378179)
chr5 (18-201)||(698264-698447)
chr5 (18-196)||(29087384-29087562)
chr5 (23-175)||(7392052-7392203)
chr5 (23-184)||(13954246-13954405)
chr5 (23-184)||(8297377-8297537)
chr5 (23-184)||(7195251-7195410)
chr5 (27-175)||(33258903-33259050)
chr5 (43-174)||(25991936-25992066)
chr5 (23-175)||(14302451-14302602)
chr5 (23-184)||(26045976-26046136)
chr5 (127-175)||(39184208-39184256)
chr5 (145-184)||(22675336-22675375)
chr5 (130-180)||(21402853-21402903)
chr5 (130-184)||(39024462-39024516)
[»] chr3 (30 HSPs)
chr3 (18-196)||(20611686-20611864)
chr3 (18-201)||(2392501-2392684)
chr3 (18-201)||(34475749-34475932)
chr3 (18-196)||(19176406-19176583)
chr3 (18-194)||(2394255-2394431)
chr3 (23-192)||(23328354-23328521)
chr3 (18-201)||(45163752-45163941)
chr3 (18-128)||(47235619-47235729)
chr3 (76-196)||(9584053-9584173)
chr3 (23-184)||(25647593-25647753)
chr3 (123-201)||(17550965-17551043)
chr3 (23-196)||(40023572-40023743)
chr3 (23-175)||(37123291-37123442)
chr3 (112-192)||(43012372-43012452)
chr3 (23-184)||(14193848-14194009)
chr3 (23-175)||(14755286-14755435)
chr3 (126-175)||(33143970-33144019)
chr3 (95-196)||(45398776-45398877)
chr3 (23-106)||(4464026-4464107)
chr3 (125-184)||(5556580-5556639)
chr3 (126-184)||(19295877-19295935)
chr3 (126-184)||(47945717-47945775)
chr3 (140-184)||(1652898-1652942)
chr3 (126-170)||(20710734-20710778)
chr3 (126-165)||(14879446-14879485)
chr3 (126-184)||(30127273-30127332)
chr3 (146-201)||(47235729-47235784)
chr3 (27-196)||(823435-823603)
chr3 (130-175)||(39021297-39021342)
chr3 (111-163)||(31482880-31482932)
[»] chr4 (27 HSPs)
chr4 (18-194)||(30964344-30964520)
chr4 (18-201)||(4305628-4305811)
chr4 (18-196)||(8254930-8255108)
chr4 (18-196)||(8268348-8268526)
chr4 (23-194)||(30167566-30167736)
chr4 (23-184)||(25753081-25753241)
chr4 (23-184)||(53823433-53823593)
chr4 (23-196)||(31050662-31050833)
chr4 (23-196)||(2825693-2825864)
chr4 (23-165)||(39421044-39421185)
chr4 (23-184)||(19815236-19815396)
chr4 (23-184)||(19673010-19673169)
chr4 (23-184)||(22811172-22811331)
chr4 (77-196)||(46698784-46698904)
chr4 (77-175)||(2061759-2061857)
chr4 (126-196)||(6599945-6600015)
chr4 (126-196)||(21387204-21387274)
chr4 (126-187)||(39041283-39041344)
chr4 (123-175)||(38637253-38637305)
chr4 (130-189)||(26474851-26474910)
chr4 (126-185)||(36962627-36962685)
chr4 (126-189)||(40813788-40813851)
chr4 (126-184)||(38929838-38929896)
chr4 (123-181)||(41117982-41118040)
chr4 (140-189)||(2792281-2792330)
chr4 (126-175)||(19311364-19311412)
chr4 (126-170)||(53756767-53756811)
[»] chr6 (15 HSPs)
chr6 (18-201)||(3117395-3117579)
chr6 (23-193)||(16510304-16510474)
chr6 (26-184)||(20701815-20701972)
chr6 (26-156)||(3880623-3880752)
chr6 (42-184)||(32935351-32935492)
chr6 (23-106)||(15132613-15132694)
chr6 (23-175)||(9223950-9224101)
chr6 (126-173)||(26216042-26216089)
chr6 (138-184)||(32316391-32316437)
chr6 (126-170)||(34090374-34090418)
chr6 (126-173)||(26534742-26534789)
chr6 (125-184)||(33968625-33968684)
chr6 (130-181)||(34105428-34105479)
chr6 (129-170)||(21266127-21266168)
chr6 (140-184)||(13423491-13423535)
[»] scaffold0068 (1 HSPs)
scaffold0068 (18-196)||(35772-35950)
[»] scaffold0050 (1 HSPs)
scaffold0050 (21-181)||(36614-36773)
[»] scaffold0200 (1 HSPs)
scaffold0200 (23-184)||(19291-19452)
[»] scaffold0119 (1 HSPs)
scaffold0119 (23-184)||(42150-42311)
[»] scaffold0063 (1 HSPs)
scaffold0063 (23-161)||(58036-58173)
[»] scaffold1613 (1 HSPs)
scaffold1613 (23-175)||(1038-1188)
[»] scaffold0620 (1 HSPs)
scaffold0620 (126-181)||(3841-3896)
[»] scaffold0062 (1 HSPs)
scaffold0062 (138-184)||(71752-71798)


Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 9519402 - 9519585
Alignment:
Q  18 ttggattcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaattt 117  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  9519402 ttggcttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggtgaggggtgccctgctaattt 9519501  T
Q  118 gatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggctctgtg 201  Q
    | ||||||||||| ||||| | |||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||    
T  9519502 ggtactatagtctagtgggccgatcagttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggctttgtg 9519585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 24995573 - 24995390
Alignment:
Q  18 ttggattcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaattt 117  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||   |||||||||    
T  24995573 ttggcttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtactgggggcgaggggtgtcttgctaattt 24995474  T
Q  118 gatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggctctgtg 201  Q
    | ||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||    
T  24995473 ggtactatagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggctttgtg 24995390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 34389183 - 34389000
Alignment:
Q  18 ttggattcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaattt 117  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  34389183 ttggcttcgagatcgggagtcggggtctagctgcaatttttgtttgacttgatttggtttttctctggtgtaccaggggcgaggggtgccctgctaattt 34389084  T
Q  118 gatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggctctgtg 201  Q
    | ||||||||||||||||| | ||||||||||||||||||||  |||| ||||||||||||||||||| |||||||||| ||||    
T  34389083 ggtactatagtctggtgggccgatcacttttgattcgagatcaagagtcagttctttgactcaagttggtttttgggctttgtg 34389000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 37987036 - 37986853
Alignment:
Q  18 ttggattcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaattt 117  Q
    |||| ||||||||||| ||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37987036 ttggcttcgagatcggtagtcggggtctagttgcattctttatttgacttgatttggtttttctctggtgtaccgggggcgaggggtgccctgctaattt 37986937  T
Q  118 gatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggctctgtg 201  Q
    | |  |||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||| |||||| ||| ||||    
T  37986936 ggtgttatagtctggtgggccaatcatttttgattcgagatcgggagtcagttctttgactcaagttggtttttgtgctttgtg 37986853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 26 - 201
Target Start/End: Complemental strand, 32066465 - 32066290
Alignment:
Q  26 gagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatactat 125  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| | ||||    
T  32066465 gagatcgggattcggggtctagttgcaatctttgtttgacttgatttggtttttctctagtgtaccgggggcgaggggtgccctgctaatttggtgctat 32066366  T
Q  126 agtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggctctgtg 201  Q
    ||||||||||| | |||||||||||||||| ||||||||| || |||||||||| ||||| |||||||||| ||||    
T  32066365 agtctggtgggccgatcacttttgattcgaaatcgggagtcagctctttgactccagttggtttttgggctttgtg 32066290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 36630740 - 36630918
Alignment:
Q  18 ttggattcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaattt 117  Q
    |||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  36630740 ttggcttcgagatcgggagacgaggtctagctgcaatctttgtttgacttgatttggtttttctttggtgtaccgggggcgaggggtgccctgctaattt 36630839  T
Q  118 gatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggct 196  Q
    | | ||| ||||||||||| | ||||||||| ||||||||||||| || ||||||||||||| ||||  ||||||||||    
T  36630840 ggttctaaagtctggtgggccgatcacttttaattcgagatcgggtgtcagttctttgactctagtttgtttttgggct 36630918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 63 - 194
Target Start/End: Complemental strand, 31207494 - 31207364
Alignment:
Q  63 gacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatactatagtctggtgggtcaatcacttttgattcgagatcggg 162  Q
    ||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||| ||||||||||||||||| | |||||||||||||||||||||||    
T  31207494 gacttgatttggtttttctctggtgtaccaggggcgaggg-tgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcggg 31207396  T
Q  163 agttagttctttgactcaagttgttttttggg 194  Q
    ||| |||||||||||||||||||  |||||||    
T  31207395 agtcagttctttgactcaagttggattttggg 31207364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 184
Target Start/End: Complemental strand, 10248725 - 10248565
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatac 122  Q
    |||||||||||||||||| ||||||||||||| |||||||| ||||||||||| |||||||||||||||||||| ||||||||  || |||||||  | |    
T  10248725 ttcgagatcgggagtcggtgtctagctgcaat-tttgtttggcttgatttggtgtttctctggtgtaccgggggtgaggggtgtccttctaattttgtcc 10248627  T
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    || | | ||||||  | |||||||||||||| ||||||||||| ||||||||| ||||||||    
T  10248626 taaaatttggtggaccgatcacttttgattcaagatcgggagtcagttctttggctcaagtt 10248565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 94 - 201
Target Start/End: Complemental strand, 16457562 - 16457456
Alignment:
Q  94 gggcgaggggtgcgctgctaatttgatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgg 193  Q
    ||||||||||||  ||||||||||||||||||||| ||||||  | |||||||||||||||||||||||||| ||||||||||||||||||| ||||| |    
T  16457562 gggcgaggggtgtcctgctaatttgatactatagtttggtggc-cgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttag 16457464  T
Q  194 gctctgtg 201  Q
    ||| ||||    
T  16457463 gctttgtg 16457456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 78 - 196
Target Start/End: Complemental strand, 15821497 - 15821379
Alignment:
Q  78 ttctctggtgtaccgggggcgaggggtgcgctgctaatttgatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgac 177  Q
    ||||||||||||||| ||||||||||||| ||||| ||||| | ||| |||||||||||   |||||||||||||||||||||||||| || ||||||||    
T  15821497 ttctctggtgtaccgagggcgaggggtgccctgctgatttggttctaaagtctggtgggctgatcacttttgattcgagatcgggagtcagctctttgac 15821398  T
Q  178 tcaagttgttttttgggct 196  Q
    | | |||| ||||||||||    
T  15821397 ttatgttggtttttgggct 15821379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 23 - 184
Target Start/End: Complemental strand, 17657173 - 17657014
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatac 122  Q
    |||||||||||||||||| | |||||| |||||||  |||| | ||||||||| |||||||| |||||||||   ||||||||| || |||| |||   |    
T  17657173 ttcgagatcgggagtcggtggctagctacaatctta-tttggcgtgatttggtgtttctctgatgtaccgggat-gaggggtgcccttctaagttggacc 17657076  T
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    || ||| ||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||    
T  17657075 taaagtatggtgggtcgatcacttttgattcgagatcgggagtcagttctttggctcaagtt 17657014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 41893474 - 41893406
Alignment:
Q  122 ctatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttt 190  Q
    ||||||||||||||| ||| |||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  41893474 ctatagtctggtgggccaaccacttttgattcgagatcgggagtcagttctttgtctcaagttgttttt 41893406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 92 - 201
Target Start/End: Complemental strand, 12898378 - 12898269
Alignment:
Q  92 gggggcgaggggtgcgctgctaatttgatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgtttttt 191  Q
    ||||||||||||||| ||  ||||||| || ||||||||||||   | |||||||||||||||||||| ||||| |||| | | |||||||||| ||||     
T  12898378 gggggcgaggggtgccctattaatttggtaatatagtctggtgacccgatcacttttgattcgagatccggagtcagttatctaactcaagttggttttg 12898279  T
Q  192 gggctctgtg 201  Q
    ||||| ||||    
T  12898278 gggctttgtg 12898269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 77 - 184
Target Start/End: Complemental strand, 30236247 - 30236140
Alignment:
Q  77 tttctctggtgtaccgggggcgaggggtgcgctgctaatttgatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttga 176  Q
    ||||||||||| ||||||||  |||||||| || || ||||| |  |  ||||||||||| | ||| |||||||||||||||||||||| |||||||||     
T  30236247 tttctctggtggaccgggggtaaggggtgcccttctgatttggttttgaagtctggtgggacgatcgcttttgattcgagatcgggagtcagttctttgg 30236148  T
Q  177 ctcaagtt 184  Q
     |||||||    
T  30236147 ttcaagtt 30236140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 20138451 - 20138512
Alignment:
Q  140 atcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggctctgtg 201  Q
    ||||||||||||| |||||||||||| |||||||||||| | |||| |||||||||| ||||    
T  20138451 atcacttttgatttgagatcgggagtcagttctttgacttatgttggtttttgggctttgtg 20138512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 31210368 - 31210319
Alignment:
Q  18 ttggattcgagatcgggagtcggggtctagctgcaatctttgtttgactt 67  Q
    |||| ||| |||||||||||| ||||||||||||||||||||||||||||    
T  31210368 ttggcttcaagatcgggagtcagggtctagctgcaatctttgtttgactt 31210319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 15906697 - 15906755
Alignment:
Q  126 agtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    ||||||||||| | ||||| |||||||||||||||||||| |||||||||  |||||||    
T  15906697 agtctggtgggccgatcacatttgattcgagatcgggagtcagttctttggttcaagtt 15906755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 32945759 - 32945715
Alignment:
Q  140 atcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    |||||||||||||||||||||||||| | |||||||| |||||||    
T  32945759 atcacttttgattcgagatcgggagtcaattctttgattcaagtt 32945715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 193
Target Start/End: Complemental strand, 38577840 - 38577793
Alignment:
Q  146 tttgattcgagatcgggagttagttctttgactcaagttgttttttgg 193  Q
    ||||||||||||||||||||||||||||||  | |||||| |||||||    
T  38577840 tttgattcgagatcgggagttagttctttggtttaagttggtttttgg 38577793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 40531243 - 40531292
Alignment:
Q  126 agtctggtgggtcaatcacttttgattcgagatcgggagttagttctttg 175  Q
    |||||| |||| | ||||||||||||||||||||||||| ||||| ||||    
T  40531243 agtctgatgggccgatcacttttgattcgagatcgggagctagttttttg 40531292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 544420 - 544376
Alignment:
Q  126 agtctggtgggtcaatcacttttgattcgagatcgggagttagtt 170  Q
    ||||||||||||| |||||||| ||||||||||||| || |||||    
T  544420 agtctggtgggtcgatcactttagattcgagatcggaagctagtt 544376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 3679471 - 3679515
Alignment:
Q  140 atcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    ||||||||||||||||||||||||||  || |||||| |||||||    
T  3679471 atcacttttgattcgagatcgggagtcggtgctttgattcaagtt 3679515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 38306164 - 38306347
Alignment:
Q  18 ttggattcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaattt 117  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  38306164 ttggcttcgagaacgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtacagggggcgaggggtgccctgctaattt 38306263  T
Q  118 gatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggctctgtg 201  Q
    | ||||||||||||||||| | ||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||| ||||    
T  38306264 ggtactatagtctggtgggccgatcacttttgattcgagattgggagtcagttctttgactcaagttggtttttgggctttgtg 38306347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 47326063 - 47325877
Alignment:
Q  18 ttggattcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaattt 117  Q
    |||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  47326063 ttggcttcgagatcgggagtcggggtctagcagcaatctttgtttaacttgatttggtttttctctggtgtaccgggggcgaggggtgccttgctaattt 47325964  T
Q  118 gatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggctctgtgctg 204  Q
    | ||||||||||||||||| | ||| ||||||||| |||||||||||| || |||||||||||||||| |||||||||| |||||||    
T  47325963 ggtactatagtctggtgggccgatcgcttttgatttgagatcgggagtcagctctttgactcaagttggtttttgggctttgtgctg 47325877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 3419834 - 3419656
Alignment:
Q  18 ttggattcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaattt 117  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||    
T  3419834 ttggcttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtataccgggggcgaggggtgccctgttaattt 3419735  T
Q  118 gatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggct 196  Q
    | ||||| ||| |||||||   |||||||||||||||||||||||||| || |||||||||||||||| ||||||||||    
T  3419734 ggtactaaagtgtggtgggctgatcacttttgattcgagatcgggagtcagctctttgactcaagttggtttttgggct 3419656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 10244086 - 10244260
Alignment:
Q  18 ttggattcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaattt 117  Q
    |||| ||||||||||||||||||| ||||| |||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  10244086 ttggcttcgagatcgggagtcgggatctagttgcaatctttgtttga-tagatttggtttttctctggtgtaccgggggagaggggtgccctgctaattt 10244184  T
Q  118 gatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgg 193  Q
    | | ||||| ||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||  |||||||    
T  10244185 ggtgctataatctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttagtttttgg 10244260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 26 - 192
Target Start/End: Complemental strand, 41089918 - 41089752
Alignment:
Q  26 gagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatactat 125  Q
    ||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||     
T  41089918 gagatcgagagttggggtctagctacaatctttgtttgacttgatttggtttttctctggtgtatcgggggcgaggggtgctctgctaatttggtactaa 41089819  T
Q  126 agtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttg 192  Q
    ||||||||||  | ||||||||||||||||||| |||||| || |||||||||||||||| ||||||    
T  41089818 agtctggtggaccgatcacttttgattcgagattgggagtcagctctttgactcaagttggtttttg 41089752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 5860466 - 5860283
Alignment:
Q  18 ttggattcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaattt 117  Q
    |||| ||||||||||||||||| |||||| |||||||||||||||| ||  |||||||||||||||  ||||||||||||||||||||| ||||||||||    
T  5860466 ttggcttcgagatcgggagtcgaggtctatctgcaatctttgtttggctgaatttggtttttctctactgtaccgggggcgaggggtgccctgctaattt 5860367  T
Q  118 gatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggctctgtg 201  Q
    | |||||||||| |||||| | ||| |||||||||||||||||||||| | ||||||||| ||||||| |||||||||| ||||    
T  5860366 ggtactatagtccggtgggcctatcgcttttgattcgagatcgggagtcaattctttgacgcaagttggtttttgggctttgtg 5860283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 23 - 196
Target Start/End: Original strand, 3867024 - 3867197
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatac 122  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||| |||||  ||||||||||| |||    
T  3867024 ttcgagatcgagagtcggggtctagctacaatctttgtttgacttgatatggtttttctctggtgtaccgagggcgaagggtggcctgctaatttggtac 3867123  T
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggct 196  Q
    || | | |||||||   |||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||    
T  3867124 taaaatatggtgggctgatcacttttgattcgagaccgggagtcagttctttgactcaagttggtttttgggct 3867197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 23 - 184
Target Start/End: Original strand, 33435018 - 33435178
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatac 122  Q
    ||||||||||| |||| |||||||| || |||||||||||  |||||||||||||| ||||||||||||||||||||||||||| ||| ||||||| |||    
T  33435018 ttcgagatcggtagtccgggtctagttgtaatctttgtttagcttgatttggtttt-ctctggtgtaccgggggcgaggggtgccctgttaatttggtac 33435116  T
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    || ||||||||| | | |||||||||||||||||||||||||| ||||||||| ||||||||    
T  33435117 taaagtctggtgagacgatcacttttgattcgagatcgggagtcagttctttgtctcaagtt 33435178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 37794903 - 37795075
Alignment:
Q  18 ttggattcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaattt 117  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||           |||||||||||||||||||| ||||||||||    
T  37794903 ttggcttcgagatcgggagttggggtctagctgcaatctttgtttgacttgatttggt-----------gtaccgggggcgaggggtgccctgctaattt 37794991  T
Q  118 gatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggctctgtg 201  Q
    | || |||||| ||||||| |  ||| ||||||||||||||||||||| |||||||||| |||||||| |||||||||| ||||    
T  37794992 ggtaatatagtatggtgggccgttcagttttgattcgagatcgggagtcagttctttgagtcaagttggtttttgggctttgtg 37795075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 28 - 161
Target Start/End: Original strand, 25160728 - 25160861
Alignment:
Q  28 gatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatactatag 127  Q
    |||||||||||||||||||| ||| || ||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||| | ||||||    
T  25160728 gatcgggagtcggggtctagttgctatttttgtttgacttggtttggtttttctctggtgtaccgagggcgaggggtgccctgctaatttggttctatag 25160827  T
Q  128 tctggtgggtcaatcacttttgattcgagatcgg 161  Q
    ||||||||  | || |||||||||||||||||||    
T  25160828 tctggtggaccgattacttttgattcgagatcgg 25160861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 26 - 184
Target Start/End: Complemental strand, 6716905 - 6716748
Alignment:
Q  26 gagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatactat 125  Q
    ||||||||||||||| ||||||||||||||||  |||| ||||||||| | |||||||||||||||| | | ||||||||| || || |||| ||  ||     
T  6716905 gagatcgggagtcggtgtctagctgcaatctta-tttggcttgatttgatgtttctctggtgtaccgagagtgaggggtgcccttctgatttaatcataa 6716807  T
Q  126 agtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    |||||||| || | |||||||||||||||||||||||||| ||||||||| ||||||||    
T  6716806 agtctggttggccgatcacttttgattcgagatcgggagtcagttctttggctcaagtt 6716748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 83 - 196
Target Start/End: Original strand, 6584877 - 6584990
Alignment:
Q  83 tggtgtaccgggggcgaggggtgcgctgctaatttgatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaag 182  Q
    ||||||||||| |||||||||||| ||||| ||||| | ||| ||||||||||| | |||||||||||||||||||||||||| || |||||| || |||    
T  6584877 tggtgtaccggaggcgaggggtgccctgctgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagctctttggcttaag 6584976  T
Q  183 ttgttttttgggct 196  Q
    ||| ||||||||||    
T  6584977 ttggtttttgggct 6584990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 23 - 196
Target Start/End: Original strand, 34389871 - 34390043
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatac 122  Q
    ||||||||| | ||| || |||||| ||||||| |  ||||||||||| |||| || ||||||||||| ||||| |||| |||| ||||| ||||| |      
T  34389871 ttcgagatcagaagttggtgtctagttgcaatcatgttttgacttgatatggtgtt-ctctggtgtactgggggtgaggagtgccctgctgatttggttt 34389969  T
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggct 196  Q
    || ||||||||||| | |||||||||||||||||||||||||| || |||||| || |||||| ||||||||||    
T  34389970 taaagtctggtgggccgatcacttttgattcgagatcgggagtcagctctttggcttaagttggtttttgggct 34390043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 23 - 196
Target Start/End: Complemental strand, 35745998 - 35745827
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatac 122  Q
    ||||||||||| ||| || | ||||| |||||||| |||||||||||| |||| || ||||| ||||||||||||||||||||| || |||||||  | |    
T  35745998 ttcgagatcggaagttggtgactagcagcaatctt-gtttgacttgatatggtgtt-ctctgatgtaccgggggcgaggggtgccctactaattttgttc 35745901  T
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggct 196  Q
    || |||||| ||||   |||||||||||||||||||||| ||| |  |||||| ||||||||| ||||||||||    
T  35745900 taaagtctgatgggctgatcacttttgattcgagatcggaagtcatctctttggctcaagttggtttttgggct 35745827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 23 - 182
Target Start/End: Original strand, 3478261 - 3478419
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatac 122  Q
    |||| ||||||||||||| | ||||||||||| || ||||| ||||||  |||  |||||| ||  | |||||| ||||||||| || ||  |||| | |    
T  3478261 ttcgggatcgggagtcggtgactagctgcaat-ttggtttggcttgatagggtaattctctagttgatcgggggtgaggggtgcccttctgttttggtcc 3478359  T
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaag 182  Q
    || ||| ||||||| | |||||||||||||||||||||||||||||||||||| ||||||    
T  3478360 taaagtttggtgggccgatcacttttgattcgagatcgggagttagttctttggctcaag 3478419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 30 - 152
Target Start/End: Original strand, 44755543 - 44755663
Alignment:
Q  30 tcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatactatagtc 129  Q
    ||||||||||| |||||||||| || |||||||||| ||||||||| ||||||||||||||| | || ||||||||| || || ||||| | ||| ||||    
T  44755543 tcgggagtcggtgtctagctgctat-tttgtttgacgtgatttggtgtttctctggtgtacc-gtggtgaggggtgcccttctgatttggtcctaaagtc 44755640  T
Q  130 tggtgggtcaatcacttttgatt 152  Q
    ||||||| | |||||||||||||    
T  44755641 tggtgggccgatcacttttgatt 44755663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 23 - 184
Target Start/End: Original strand, 1320703 - 1320863
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatac 122  Q
    ||||||||||||||| || ||||||||| ||| |||||||| |   ||||||| |||||||| |||| |||||| ||||||||| ||  | ||||| |      
T  1320703 ttcgagatcgggagttggtgtctagctgtaat-tttgtttggcgcaatttggtgtttctctgatgtatcgggggtgaggggtgcccttttgatttggtca 1320801  T
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    || ||||||||||| | |||||||||||||| | ||||| ||| ||||||||| ||||||||    
T  1320802 taaagtctggtgggccgatcacttttgattcaaaatcggaagtcagttctttggctcaagtt 1320863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 23 - 165
Target Start/End: Complemental strand, 42533424 - 42533283
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatac 122  Q
    |||||||||||||||| | ||| ||||||| ||||  |||| |  ||| |||| ||||||||||| | |||||| ||||||||| || || ||||| | |    
T  42533424 ttcgagatcgggagtctgtgtccagctgcattctta-tttggcgcgatgtggtgtttctctggtgcatcgggggtgaggggtgccctcctgatttggtcc 42533326  T
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagt 165  Q
    || |||||||||||   ||||||||||||||||||||||||||    
T  42533325 taaagtctggtgggctgatcacttttgattcgagatcgggagt 42533283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 184
Target Start/End: Original strand, 8745062 - 8745222
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatac 122  Q
    ||||||||||| || ||| ||||||||||||| || |||||   |||| |||| ||||||||||| |||| ||| ||||||||  || || ||||| | |    
T  8745062 ttcgagatcggaaggcggtgtctagctgcaatgtt-gtttggtgtgatctggtgtttctctggtgcaccgagggtgaggggtggccttctgatttggtcc 8745160  T
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    || | ||||||||| | |||||||||||||||||||||||| | ||||| |||  |||||||    
T  8745161 taaattctggtgggccgatcacttttgattcgagatcgggattcagttcgttggatcaagtt 8745222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 184
Target Start/End: Original strand, 16954566 - 16954722
Alignment:
Q  27 agatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatactata 126  Q
    |||||| |||| || |||||||||||||||| ||| | |  |||||||| ||||||||||||| | | || ||||||||| || || ||||| | ||| |    
T  16954566 agatcgagagttggtgtctagctgcaatcttggttgg-cgcgatttggtctttctctggtgtatcagaggtgaggggtgcccttctgatttggtcctaaa 16954664  T
Q  127 gtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    ||||||| |  | |||||||||| ||||||||||  ||| ||||||||||||||||||    
T  16954665 gtctggttgaccgatcacttttgtttcgagatcgaaagtcagttctttgactcaagtt 16954722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 36 - 184
Target Start/End: Complemental strand, 24324957 - 24324810
Alignment:
Q  36 gtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatactatagtctggtgg 135  Q
    ||||| |||||| ||||||||| |||||   ||||||||| ||||| |||||||||||||   |||||||| || || ||||| |  || ||| ||||||    
T  24324957 gtcggtgtctagttgcaatctt-gtttggtgtgatttggtgtttctttggtgtaccggggtttaggggtgcccttctgatttggtcttaaagtttggtgg 24324859  T
Q  136 gtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    | | |||| ||||||||||||||||||||| | ||||||| ||||||||    
T  24324858 gccgatcaattttgattcgagatcgggagtcaattctttggctcaagtt 24324810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 184
Target Start/End: Original strand, 13311747 - 13311908
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtt-tttctctggtgtaccgggggcgaggggtgcgctgctaatttgata 121  Q
    ||||||||||||||| || ||||| ||||| ||||  ||||||| || || ||| ||||||||||| |||||||   |||||||| |  ||  |||| |     
T  13311747 ttcgagatcgggagttggtgtctaactgcattcttattttgact-gacttcgttgtttctctggtggaccggggataaggggtgcccgtctggtttggtc 13311845  T
Q  122 ctatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
     | |||||||||||| | |||||||||||||||||||||||||| |||||||||  |||||||    
T  13311846 atgtagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggttcaagtt 13311908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 184
Target Start/End: Complemental strand, 16829064 - 16828948
Alignment:
Q  68 gatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatactatagtctggtgggtcaatcacttttgattcgagatcgggagtta 167  Q
    |||||||| ||||||| ||||| | |||| ||||||||| || || ||||| | ||| |||||||| ||   |||||||||| ||||||||||  ||| |    
T  16829064 gatttggtgtttctctagtgtatcaggggtgaggggtgcccttctgatttggtcctaaagtctggttggctgatcacttttgtttcgagatcgaaagtca 16828965  T
Q  168 gttctttgactcaagtt 184  Q
    |||||||||||||||||    
T  16828964 gttctttgactcaagtt 16828948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 44353620 - 44353559
Alignment:
Q  140 atcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggctctgtg 201  Q
    ||||||||||||| |||||||||||| |||||||||||| | |||| |||||||||| ||||    
T  44353620 atcacttttgatttgagatcgggagtcagttctttgacttatgttggtttttgggctttgtg 44353559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 184
Target Start/End: Complemental strand, 11379301 - 11379139
Alignment:
Q  21 gattcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgat 120  Q
    ||||| ||||||||||| || |||||||| ||||||| ||||| ||   |  ||| ||||||||||| |||| |||   ||||||| || |||||||| |    
T  11379301 gattcaagatcgggagttggtgtctagctacaatctt-gtttggctgactacggtgtttctctggtggaccgagggtttggggtgcccttctaatttggt 11379203  T
Q  121 actatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
      | |||||||||| | | ||| |||||||||||||||||||||| ||| |||||  |||||||    
T  11379202 catgtagtctggtgagccgatcgcttttgattcgagatcgggagtcagtactttggttcaagtt 11379139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 46262189 - 46262136
Alignment:
Q  126 agtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactc 179  Q
    ||||||||||| | ||||||||||||||||||||||||| |||||  |||||||    
T  46262189 agtctggtgggccgatcacttttgattcgagatcgggagctagtttcttgactc 46262136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 2613935 - 2613879
Alignment:
Q  128 tctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    |||||| || |||||||||||||||||||||||| ||||||| | |||| |||||||    
T  2613935 tctggttggccaatcacttttgattcgagatcggaagttagtgccttgattcaagtt 2613879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 165
Target Start/End: Original strand, 9349760 - 9349799
Alignment:
Q  126 agtctggtgggtcaatcacttttgattcgagatcgggagt 165  Q
    ||||||||||| | ||||||||||||||||||||||||||    
T  9349760 agtctggtgggccgatcacttttgattcgagatcgggagt 9349799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 165
Target Start/End: Original strand, 38485567 - 38485606
Alignment:
Q  126 agtctggtgggtcaatcacttttgattcgagatcgggagt 165  Q
    ||||||||||| | ||||||||||||||||||||||||||    
T  38485567 agtctggtgggccgatcacttttgattcgagatcgggagt 38485606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 12480901 - 12480955
Alignment:
Q  130 tggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    ||||||| | ||| |||||||||||||||||||||| |||||||||  |||||||    
T  12480901 tggtgggccgatcgcttttgattcgagatcgggagtcagttctttggttcaagtt 12480955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 184
Target Start/End: Complemental strand, 22568178 - 22568124
Alignment:
Q  130 tggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    |||| |||||||| ||||||||||| ||||||||||||||| ||||  |||||||    
T  22568178 tggtaggtcaatcgcttttgattcgtgatcgggagttagttttttggttcaagtt 22568124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 48058724 - 48058666
Alignment:
Q  126 agtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    ||||||||||||| ||| ||||||||| |||||||| ||| |||| |||| ||||||||    
T  48058724 agtctggtgggtcgatcgcttttgatttgagatcggaagtcagttttttggctcaagtt 48058666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 165
Target Start/End: Original strand, 23983162 - 23983245
Alignment:
Q  81 tctggtgtaccgggggcgaggggtgcgctgctaatttgatactatagtctggtgggtcaatcacttttgattcgagatcgggagt 165  Q
    ||||||| |||| ||| ||||||||| || |||||||| |  |  ||||||||||||| |||  |||||||||||||||||||||    
T  23983162 tctggtggaccgagggtgaggggtgc-cttctaatttggtcttgaagtctggtgggtcgatcgtttttgattcgagatcgggagt 23983245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 27993606 - 27993562
Alignment:
Q  126 agtctggtgggtcaatcacttttgattcgagatcgggagttagtt 170  Q
    ||||||||||  | ||||||||||||||||||||||||| |||||    
T  27993606 agtctggtggaccgatcacttttgattcgagatcgggagctagtt 27993562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 35206763 - 35206719
Alignment:
Q  126 agtctggtgggtcaatcacttttgattcgagatcgggagttagtt 170  Q
    ||||||||||| | |||||||||||| |||||||||||| |||||    
T  35206763 agtctggtgggccgatcacttttgatccgagatcgggagctagtt 35206719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 39339043 - 39338860
Alignment:
Q  18 ttggattcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaattt 117  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  39339043 ttggcttcgagatcgggagtcggggtctagctgcaatatttgtttgacttgatttggtttttctttggtgtaccgggggcgaggggtgccctgctaattt 39338944  T
Q  118 gatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggctctgtg 201  Q
    | ||||||||||||||||| | ||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||    
T  39338943 ggtactatagtctggtgggccgatcgcttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggctttgtg 39338860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 10524000 - 10524187
Alignment:
Q  18 ttggattcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaattt 117  Q
    |||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||| |||| |||||    
T  10524000 ttggcttcgagatcgggagtcgggctctagttgcaatctttgtttgacttgatttggtttttctctggtctactgggggcgagaggtgccctgccaattt 10524099  T
Q  118 gatactatagtctggtgggtcaatcacttttgattcgagatcgggagtta----gttctttgactcaagttgttttttgggctctgtg 201  Q
    | | ||||||||||||||| | |||||||||||||||||||||||||| |     ||||||||||||||||| |||||||||| ||||    
T  10524100 ggtgctatagtctggtgggccgatcacttttgattcgagatcgggagtcaatatattctttgactcaagttggtttttgggctttgtg 10524187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 23 - 196
Target Start/End: Original strand, 7874201 - 7874372
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatac 122  Q
    ||||||||||||||| || |||||||||||||| | | |||||||||| |||| || |||| |||||||| |||||| |||||| ||||| ||||| | |    
T  7874201 ttcgagatcgggagttggtgtctagctgcaatcct-gcttgacttgatatggtgtt-ctctagtgtaccgagggcgatgggtgccctgctgatttggttc 7874298  T
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggct 196  Q
    || ||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||| ||||||||||    
T  7874299 taaagtctggtgggtcgatcacttttgattcgagatcgggagtcagctctttgactcaagttggtttttgggct 7874372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 69 - 192
Target Start/End: Original strand, 387128 - 387250
Alignment:
Q  69 atttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatactatagtctggtgggtcaatcacttttgattcgagatcgggagttag 168  Q
    ||||||||||||||||||  ||||||| |||||||||| ||||||||||| ||||| |||||||||||   ||||||||||||| |||||||||||| |     
T  387128 atttggtttttctctggtacaccgggg-cgaggggtgccctgctaatttggtactaaagtctggtgggctgatcacttttgatttgagatcgggagtcaa 387226  T
Q  169 ttctttgactcaagttgttttttg 192  Q
    ||||||||||||||||| ||||||    
T  387227 ttctttgactcaagttggtttttg 387250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 78 - 196
Target Start/End: Original strand, 14405162 - 14405279
Alignment:
Q  78 ttctctggtgtaccgggggcgaggggtgcgctgctaatttgatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgac 177  Q
    |||||||||||||||||||||||||||||  || | ||||| | ||| ||||||||||| | |||||||||||||||||||||||||| || |||||| |    
T  14405162 ttctctggtgtaccgggggcgaggggtgct-tgatgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagctctttggc 14405260  T
Q  178 tcaagttgttttttgggct 196  Q
    |||||||| ||||||||||    
T  14405261 tcaagttggtttttgggct 14405279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 23 - 174
Target Start/End: Complemental strand, 14106696 - 14106546
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatac 122  Q
    |||||||  ||||||||| | |||||||||||| | ||||||||||||||||| || ||||  ||||||  ||||||||||||| ||||| ||||| | |    
T  14106696 ttcgagacagggagtcggtgactagctgcaatcct-gtttgacttgatttggtgttcctctcatgtacccagggcgaggggtgccctgctgatttggtcc 14106598  T
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagttagttcttt 174  Q
    || ||||||||||| | |||||||||||||| ||||||||||| || |||||    
T  14106597 taaagtctggtgggccgatcacttttgattcaagatcgggagtcagctcttt 14106546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 23 - 184
Target Start/End: Original strand, 1269391 - 1269552
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatac 122  Q
    |||||||||||||||||  ||||||||||| ||||  |||| ||| ||||| | |||||||||| ||||   || ||||||||| || || ||||  | |    
T  1269391 ttcgagatcgggagtcgatgtctagctgcattcttgttttggcttaatttgatgtttctctggtataccaaaggtgaggggtgcccttctgatttagtcc 1269490  T
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    || ||||||||||| | |||||||||||||||||||||| ||| ||||||||| ||||||||    
T  1269491 taaagtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggctcaagtt 1269552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 26 - 159
Target Start/End: Complemental strand, 41086955 - 41086825
Alignment:
Q  26 gagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatactat 125  Q
    |||||||||| |||| ||| |||| |||| |||||||| | ||||||||| || |||||||||||| |||| ||||| ||| || || ||||| |  |||    
T  41086955 gagatcgggaatcggtgtccagctacaat-tttgtttggcgtgatttggtgtt-ctctggtgtaccaggggtgaggg-tgcccttctgatttggtcatat 41086859  T
Q  126 agtctggtgggtcaatcacttttgattcgagatc 159  Q
    ||||||||||||||||||||||||||||||||||    
T  41086858 agtctggtgggtcaatcacttttgattcgagatc 41086825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 184
Target Start/End: Original strand, 13337183 - 13337343
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatac 122  Q
    |||||||| | ||||||| ||||||| ||||||||  | || | ||||||||| ||||||||||||||| |||    ||||||| || || ||||||       
T  13337183 ttcgagattgagagtcggtgtctagcagcaatctta-tctggcgtgatttggtgtttctctggtgtaccagggtgagggggtgcccttctgatttgacct 13337281  T
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    || |||||| |||| | |||||||||||||||| ||||| ||| ||||||||||||||||||    
T  13337282 taaagtctgatgggccgatcacttttgattcgaaatcggaagtcagttctttgactcaagtt 13337343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 33 - 160
Target Start/End: Original strand, 17105330 - 17105457
Alignment:
Q  33 ggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatactatagtctgg 132  Q
    |||||||| |||||||||||| ||| ||||||||| ||| ||| ||||| ||||||||| |||| ||||||||| || || ||||| ||||  ||||||     
T  17105330 ggagtcggcgtctagctgcaacctt-gtttgacttaattaggtgtttctttggtgtaccaggggtgaggggtgccctactgatttggtactgaagtctga 17105428  T
Q  133 tgggtcaatcac-ttttgattcgagatcg 160  Q
    |||| | ||||| ||||||||||||||||    
T  17105429 tgggccgatcactttttgattcgagatcg 17105457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 184
Target Start/End: Complemental strand, 10173751 - 10173590
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgattt-ggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgata 121  Q
    |||| |||||| |||||| |||||||||||||||| ||||| ||||||   ||| ||||||||||||||| | || || |||||| ||  |  |||| |     
T  10173751 ttcgggatcggaagtcggtgtctagctgcaatctt-gtttggcttgataacggtgtttctctggtgtaccagaggtgaagggtgctcttttgttttggtc 10173653  T
Q  122 ctatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    ||| ||||| ||||| | |||||||||||||||||||||| ||| |||| |||| ||||||||    
T  10173652 ctaaagtctagtgggccgatcacttttgattcgagatcggaagtaagttatttggctcaagtt 10173590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 77 - 172
Target Start/End: Complemental strand, 31902533 - 31902438
Alignment:
Q  77 tttctctggtgtaccgggggcgaggggtgcgctgctaatttgatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttct 172  Q
    ||||||||||| ||||||||  |||||||  || || ||||||| ||  ||||||||||| ||||| ||||| |||||||||||||||| ||||||    
T  31902533 tttctctggtggaccgggggttaggggtgtccttcttatttgatgctgaagtctggtgggccaatcgcttttaattcgagatcgggagtcagttct 31902438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 196
Target Start/End: Original strand, 4471934 - 4472004
Alignment:
Q  126 agtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggct 196  Q
    ||||||||||| | ||| | |||||||||||||||||||| |||||||||| |||||||  ||||||||||    
T  4471934 agtctggtgggccgatcgcctttgattcgagatcgggagtcagttctttgattcaagtttgtttttgggct 4472004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 22885203 - 22885145
Alignment:
Q  126 agtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    ||||||||||| | |||||||||||||||||||||||||| |||||||||  |||||||    
T  22885203 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggttcaagtt 22885145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 16959993 - 16960051
Alignment:
Q  126 agtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    ||||||||||| | ||| ||||||||||||||||| |||| ||||||||| ||||||||    
T  16959993 agtctggtgggccgatcgcttttgattcgagatcgagagtcagttctttggctcaagtt 16960051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 189
Target Start/End: Complemental strand, 9560844 - 9560795
Alignment:
Q  140 atcacttttgattcgagatcgggagttagttctttgactcaagttgtttt 189  Q
    ||||||||||||||||||||||||| ||||| ||||||||| ||| ||||    
T  9560844 atcacttttgattcgagatcgggagctagttttttgactcaggttctttt 9560795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 164
Target Start/End: Complemental strand, 4162090 - 4162052
Alignment:
Q  126 agtctggtgggtcaatcacttttgattcgagatcgggag 164  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  4162090 agtctggtgggccgatcacttttgattcgagatcgggag 4162052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 15126480 - 15126426
Alignment:
Q  126 agtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactca 180  Q
    ||||||||||| | |||| |||||||||||||||||||||  |||||||| ||||    
T  15126480 agtctggtgggccgatcatttttgattcgagatcgggagtcggttctttggctca 15126426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 15723195 - 15723241
Alignment:
Q  138 caatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    |||||||||||||||||||||||  |||||||||||||  |||||||    
T  15723195 caatcacttttgattcgagatcgtcagttagttctttgtttcaagtt 15723241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 2062901 - 2062958
Alignment:
Q  127 gtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    |||||||||| | ||  |||||||||||||||||||||| || |||||| ||||||||    
T  2062901 gtctggtgggccgattgcttttgattcgagatcgggagtcagctctttggctcaagtt 2062958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 33788702 - 33788653
Alignment:
Q  126 agtctggtgggtcaatcacttttgattcgagatcgggagttagttctttg 175  Q
    ||||||||||| | ||| ||||||||||||||| |||||| |||||||||    
T  33788702 agtctggtgggccgatcgcttttgattcgagattgggagtcagttctttg 33788653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 7695988 - 7696032
Alignment:
Q  140 atcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    |||||||||||||||| | ||||||| ||||||||| ||||||||    
T  7695988 atcacttttgattcgataccgggagtcagttctttggctcaagtt 7696032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 31585938 - 31585755
Alignment:
Q  18 ttggattcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaattt 117  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||| ||||||||||    
T  31585938 ttggcttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtactgagggtgaggggtgccctgctaattt 31585839  T
Q  118 gatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggctctgtg 201  Q
    | ||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||    
T  31585838 ggtactatagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggctttgtg 31585755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 41920356 - 41920538
Alignment:
Q  18 ttggattcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaattt 117  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||    
T  41920356 ttggcttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtactgggg-cgaggggtgccctgctaattt 41920454  T
Q  118 gatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggctctgtg 201  Q
    | ||||| ||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||  ||||||||| ||||    
T  41920455 ggtactacagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggattttgggctttgtg 41920538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 5389599 - 5389416
Alignment:
Q  18 ttggattcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaattt 117  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||    
T  5389599 ttggcttcgagatcgggagtccgggtctagctgcaatctttgtttgacttgatttgatttttctctggtgtaccgggggcgaggggtgcccagctaattt 5389500  T
Q  118 gatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggctctgtg 201  Q
    | ||||||||||||  ||| | |||||||||||||||||||||||||| ||||||||||||||||||  |||||||||| ||||    
T  5389499 ggtactatagtctgaagggccgatcacttttgattcgagatcgggagtcagttctttgactcaagtttgtttttgggctttgtg 5389416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 46692997 - 46692814
Alignment:
Q  18 ttggattcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaattt 117  Q
    |||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||    
T  46692997 ttggcttcgagatcgggagtcgaggtctagttgcaatctttgtttgacttgatttgatttttctctggtgtaccgggggcgagaggtgccctgctaattt 46692898  T
Q  118 gatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggctctgtg 201  Q
    | |  |||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||    
T  46692897 ggtgatatagtctggtgggccgatcacttttgattcgagatcgggagttagttctttggctcaagttggtttttgggctttgtg 46692814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 30686082 - 30685899
Alignment:
Q  18 ttggattcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaattt 117  Q
    |||| ||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  30686082 ttggcttcgagatcgggagtcgaggtctaactgcaatccttgtttgacttgatttggtttttctctggtgtacctggggcgaggggtgccctgctaattt 30685983  T
Q  118 gatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggctctgtg 201  Q
    | ||||||||||| ||||| | ||||||||||||| |||||||||||| |||||||||||||||||||  ||||||||| ||||    
T  30685982 ggtactatagtcttgtgggccgatcacttttgatttgagatcgggagtcagttctttgactcaagttggcttttgggctttgtg 30685899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 24450108 - 24449932
Alignment:
Q  18 ttggattcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaattt 117  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||    
T  24450108 ttggcttcgagatcgggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtaccgggggcgaggggtgccctgctatttt 24450009  T
Q  118 gatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttggg 194  Q
    | ||||||||| ||||||| | ||||||||||||| |||||||| ||| ||||||||| || |||||| ||||||||    
T  24450008 ggtactatagtttggtgggccgatcacttttgatttgagatcggaagtcagttctttgtcttaagttggtttttggg 24449932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 24684655 - 24684478
Alignment:
Q  18 ttggattcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaattt 117  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||    
T  24684655 ttggcttcgagatcgggagtcggggtctagctgtaatctttgtttgacttgatttggtttt-ctctggtgtaccgggggcgaggggtgccctactaattt 24684557  T
Q  118 gatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggct 196  Q
    ||| ||| ||||||||||| | ||||||||| ||||||||||||  || ||||||||||||| ||||| ||||||||||    
T  24684556 gattctaaagtctggtgggccgatcacttttaattcgagatcggatgtcagttctttgactctagttggtttttgggct 24684478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 20113699 - 20113523
Alignment:
Q  18 ttggattcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaattt 117  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||  || ||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  20113699 ttggcttcgagatcgggagtcggggtctagctgcaatctttgttagatatggtttggtttttctcgggtgtaccgggggcgaggggtgccctgctaattt 20113600  T
Q  118 gatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttggg 194  Q
    | || ||||||||| |||| | |||| ||||||||| ||||||||| | |||||||| ||| |||||| ||||||||    
T  20113599 ggtattatagtctgctgggacgatcatttttgattcaagatcgggaatcagttctttaacttaagttggtttttggg 20113523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 27 - 196
Target Start/End: Original strand, 24658843 - 24659010
Alignment:
Q  27 agatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatactata 126  Q
    ||||||||||| || |||||||||||||| | |||||||||||| |||| || |||||||||| ||||||| |||||||| ||||| ||||| | ||| |    
T  24658843 agatcgggagttggtgtctagctgcaatcat-gtttgacttgatatggtgtt-ctctggtgtatcgggggcaaggggtgccctgctgatttggttctaaa 24658940  T
Q  127 gtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggct 196  Q
    |||||||||| |||||||||||||||||||||||||||| || |||||| || |||||| ||||||||||    
T  24658941 gtctggtgggccaatcacttttgattcgagatcgggagtcagctctttggctgaagttggtttttgggct 24659010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 196
Target Start/End: Complemental strand, 46814640 - 46814467
Alignment:
Q  21 gattcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgat 120  Q
    |||||||||||| |||| || |||||| ||||||| | |||||||||||| |||| || |||||||||||||||||| |||||||| ||||| ||||| |    
T  46814640 gattcgagatcgagagttggtgtctagttgcaatcct-gtttgacttgatatggtgtt-ctctggtgtaccgggggcaaggggtgccctgctgatttggt 46814543  T
Q  121 actatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggct 196  Q
     ||| ||||||||||| | |||||||||||||||||||||||||| || | |||| ||||||||| ||||| ||||    
T  46814542 tctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagctttttggctcaagttggttttttggct 46814467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 23 - 165
Target Start/End: Original strand, 7857563 - 7857703
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatac 122  Q
    ||||||||||||||| || |||||| |||||| | ||||||||||||| || || ||||||||||||| ||||||||||||||| ||||| ||||| | |    
T  7857563 ttcgagatcgggagttggtgtctagttgcaat-tatgtttgacttgatatg-ttgttctctggtgtactgggggcgaggggtgccctgctgatttggttc 7857660  T
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagt 165  Q
    || ||||||||||| | ||||||||||||||||||||||||||    
T  7857661 taaagtctggtgggccgatcacttttgattcgagatcgggagt 7857703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 87 - 201
Target Start/End: Original strand, 5459133 - 5459247
Alignment:
Q  87 gtaccgggggcgaggggtgcgctgctaatttgatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgt 186  Q
    |||||||||||||||||| | ||||||||||| | ||||||||||||||| | |||||||||||||||||||||||||| | || ||||| ||||||||     
T  5459133 gtaccgggggcgaggggtaccctgctaatttggtgctatagtctggtgggccgatcacttttgattcgagatcgggagtcaattatttgattcaagttga 5459232  T
Q  187 tttttgggctctgtg 201  Q
    |||||||||| ||||    
T  5459233 tttttgggctttgtg 5459247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 23 - 175
Target Start/End: Complemental strand, 9313461 - 9313310
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatac 122  Q
    ||||||||||||||| || ||||||||||||| |||||||| | ||||||||| ||||||| ||||| |||| | ||||||||| || || ||||| | |    
T  9313461 ttcgagatcgggagttggtgtctagctgcaat-tttgtttgccgtgatttggtgtttctctcgtgtatcgggcgtgaggggtgcccttctgatttggtcc 9313363  T
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttg 175  Q
    || ||||| |||||   |||||||||||||||||||||||||| |||||||||    
T  9313362 taaagtctagtgggctgatcacttttgattcgagatcgggagtcagttctttg 9313310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 78 - 190
Target Start/End: Complemental strand, 27031958 - 27031846
Alignment:
Q  78 ttctctggtgtaccgggggcgaggggtgcgctgctaatttgatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgac 177  Q
    |||||||||||||||||||  |||||||| ||||| ||||| | ||| ||||| ||||| | ||||||||||||||||||||| |||| || |||||| |    
T  27031958 ttctctggtgtaccgggggaaaggggtgccctgctgatttggttctaaagtctagtgggccgatcacttttgattcgagatcgagagtcagctctttggc 27031859  T
Q  178 tcaagttgttttt 190  Q
    |||||||| ||||    
T  27031858 tcaagttggtttt 27031846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 23 - 184
Target Start/End: Complemental strand, 32864734 - 32864573
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatac 122  Q
    ||||| ||| |||||||| |||||||| |||||||  |||| ||| ||||||| ||| |||| | ||| | ||| ||||||||| || |  ||||| | |    
T  32864734 ttcgaaatcaggagtcggtgtctagctacaatcttgttttggctttatttggtgtttatctgatctactgagggtgaggggtgcccttccgatttggtcc 32864635  T
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    || || |||||||| ||||||||||| |||||||||||| |||  |||||||||||||||||    
T  32864634 taaaggctggtgggccaatcacttttaattcgagatcggaagtcggttctttgactcaagtt 32864573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 184
Target Start/End: Original strand, 17033571 - 17033655
Alignment:
Q  100 ggggtgcgctgctaatttgatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    ||||||| || || ||||| | ||||||||||||||| | ||||||||||| |||||||||||||| |||||||||  |||||||    
T  17033571 ggggtgcccttctgatttggtcctatagtctggtgggccgatcacttttgaatcgagatcgggagtcagttctttggttcaagtt 17033655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 19598647 - 19598705
Alignment:
Q  126 agtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    ||||||||||| | ||| ||||||||||||||||| |||| ||||||||||||||||||    
T  19598647 agtctggtgggccgatcgcttttgattcgagatcgagagtcagttctttgactcaagtt 19598705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 16147464 - 16147536
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccggggg 96  Q
    ||||||||||||||||   |||||||||||||||| ||||| ||||||||||| ||||||| | ||||||||||    
T  16147464 ttcgagatcgggagtcactgtctagctgcaatctt-gtttggcttgatttggtgtttctctagcgtaccggggg 16147536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 175
Target Start/End: Complemental strand, 38544909 - 38544759
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgattt-ggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgata 121  Q
    |||||||| |||||| || |||||||||||||||| |||||| ||||||| ||| ||||||||||| || |||   ||||||| | || || ||||| |     
T  38544909 ttcgagattgggagttggtgtctagctgcaatctt-gtttga-ttgattttggtgtttctctggtggactgggaatgaggggtcc-cttctgatttggtc 38544813  T
Q  122 ctatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttg 175  Q
     |  ||||||||||| | ||| |||||||||||||||||||||| |||||||||    
T  38544812 atgaagtctggtgggccgatcgcttttgattcgagatcgggagtcagttctttg 38544759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 184
Target Start/End: Original strand, 27102102 - 27102260
Alignment:
Q  26 gagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgagggg-tgcgctgctaatttgatacta 124  Q
    ||||| || |||||| |||| |||||||||||  |||| | ||||||||| |||||||||||||||| ||| |||||| ||| || ||  |||| |   |    
T  27102102 gagattggaagtcggtgtctggctgcaatctta-tttggcgtgatttggtgtttctctggtgtaccgagggtgagggggtgcccttctgttttggtctca 27102200  T
Q  125 tagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
     |||||   ||| | |||||||||||||||||||||||||| |||||||||  |||||||    
T  27102201 aagtctaacgggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtt 27102260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 196
Target Start/End: Original strand, 27905423 - 27905493
Alignment:
Q  126 agtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggct 196  Q
    ||||||||||  | |||||||||||||||||||| | |||||||||||||| ||| ||| | |||||||||    
T  27905423 agtctggtggaccgatcacttttgattcgagatcagaagttagttctttgattcatgttttgttttgggct 27905493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 15840982 - 15840924
Alignment:
Q  126 agtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    |||||||||||   |||||||||||||||||||||||||| ||||  |||| |||||||    
T  15840982 agtctggtgggctgatcacttttgattcgagatcgggagtcagtttcttgattcaagtt 15840924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 175
Target Start/End: Original strand, 46603402 - 46603452
Alignment:
Q  125 tagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttg 175  Q
    |||||||||||| || || ||||||||||||||||| |||| |||||||||    
T  46603402 tagtctggtgggccattcgcttttgattcgagatcgagagtcagttctttg 46603452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 13987634 - 13987695
Alignment:
Q  128 tctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgtttt 189  Q
    ||||||||| ||||| |||||| |||||||||||||| ||||| ||||| ||| ||| ||||    
T  13987634 tctggtgggccaatcgcttttgcttcgagatcgggagctagttttttgattcaggttctttt 13987695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 9e-66; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 18593146 - 18593324
Alignment:
Q  18 ttggattcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaattt 117  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||    
T  18593146 ttggcttcgagatcgggagtcggggtctagttgcaatctttgtttgacttgatttggtttttctctcgtgtaccgggggcgagggatgccctgctaattt 18593245  T
Q  118 gatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggct 196  Q
    | | ||||||| | |||||   |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18593246 ggtgctatagtttagtgggcagatcacttttgattcgagatcgggagttagttctttgactcaagttggtttttgggct 18593324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 34378001 - 34378179
Alignment:
Q  18 ttggattcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaattt 117  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||| ||||||||||    
T  34378001 ttggcttcgagatcgggagtcgaggtctagctgcaatctttgtttgacttgatttgggttttctctggtgtaccgggggcaaggagtgccctgctaattt 34378100  T
Q  118 gatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggct 196  Q
    | ||||| ||||||||||| | |||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||    
T  34378101 ggtactaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgacacaagttggtttttgggct 34378179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 698264 - 698447
Alignment:
Q  18 ttggattcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaattt 117  Q
    |||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  698264 ttggcttcgagatcgggagtcagggtctagttgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgccctgctaattt 698363  T
Q  118 gatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggctctgtg 201  Q
    | | ||||||||||||||  | ||| |||||||||||||||||||||| |  |||||||||||||||| |||||||||| ||||    
T  698364 ggtgctatagtctggtggaccgatctcttttgattcgagatcgggagtcaactctttgactcaagttggtttttgggctttgtg 698447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 29087384 - 29087562
Alignment:
Q  18 ttggattcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaattt 117  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||  ||||||| ||||||||||||||||||||| |||||| |||    
T  29087384 ttggcttcgagatcgggagtcggagtctagctgcaatctttgtttgacttgttttggtaattctctgttgtaccgggggcgaggggtgctctgctatttt 29087483  T
Q  118 gatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggct 196  Q
    | | ||| ||||||||||    ||| |||||||||||||||| ||||| |||||||||| |||| ||| ||| ||||||    
T  29087484 ggttctaaagtctggtggactgatcccttttgattcgagatcaggagtcagttctttgaatcaaattggtttctgggct 29087562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 23 - 175
Target Start/End: Complemental strand, 7392203 - 7392052
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatac 122  Q
    ||||||||||||||| || |||||||||||||||| ||||| ||||||||||| |||||||| ||||||| ||| ||||||||| || || ||||| | |    
T  7392203 ttcgagatcgggagttggtgtctagctgcaatctt-gtttggcttgatttggtgtttctctgatgtaccgagggtgaggggtgcccttctgatttggtcc 7392105  T
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttg 175  Q
    || ||||||||||  | |||||||||||||||||||||||||| |||||||||    
T  7392104 taaagtctggtggaccgatcacttttgattcgagatcgggagtcagttctttg 7392052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 23 - 184
Target Start/End: Complemental strand, 13954405 - 13954246
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatac 122  Q
    |||||||||  ||||||| ||||||||||||||||  ||||||||||||| || ||||||||||||||||  || ||||||||| || || ||||| | |    
T  13954405 ttcgagatcaagagtcggtgtctagctgcaatctta-tttgacttgattttgtgtttctctggtgtaccgaaggtgaggggtgc-cttctgatttggtcc 13954308  T
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    || ||||||||||| | |||||||||||||||||||||||||| | | ||||| ||||||||    
T  13954307 taaagtctggtgggccgatcacttttgattcgagatcgggagtcattactttggctcaagtt 13954246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 23 - 184
Target Start/End: Original strand, 8297377 - 8297537
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatac 122  Q
    |||||||||| |||| || ||||||||||||| |||||||  ||||||||||| ||||||| |||||||| ||| ||||||||| || || ||||| | |    
T  8297377 ttcgagatcgagagttggtgtctagctgcaat-tttgttttgcttgatttggtgtttctctagtgtaccgagggtgaggggtgcccttctgatttggttc 8297475  T
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    || ||  |||||||  ||| | ||||||||||||||||||||| ||||||||| ||||||||    
T  8297476 taaagcatggtgggctaataatttttgattcgagatcgggagtcagttctttggctcaagtt 8297537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 23 - 184
Target Start/End: Complemental strand, 7195410 - 7195251
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatac 122  Q
    |||||||||||||||||| | ||||||||||| || ||||| | |||||| || ||||||||||||||| |||  ||||||||| || || |||||        
T  7195410 ttcgagatcgggagtcggtggctagctgcaatatt-gtttggcgtgatttagtgtttctctggtgtaccagggt-gaggggtgcccttctgatttggcca 7195313  T
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    || ||||||||| | | |||||||||||||||||||||||||| ||||||||| ||||||||    
T  7195312 taaagtctggtgagccgatcacttttgattcgagatcgggagtcagttctttggctcaagtt 7195251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 27 - 175
Target Start/End: Complemental strand, 33259050 - 33258903
Alignment:
Q  27 agatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatactata 126  Q
    ||||||||||||||  ||||||| ||||||| ||||| |  |||||||| ||||||||||||||||  || ||||||||  || ||  |||| | ||| |    
T  33259050 agatcgggagtcggtatctagctacaatctt-gtttggcgcgatttggtgtttctctggtgtaccgaaggtgaggggtgtccttctgttttggtgctaaa 33258952  T
Q  127 gtctggtgggtcaatcacttttgattcgagatcgggagttagttctttg 175  Q
    |||||||||| | |||||||||||||||||||| |||||||||||||||    
T  33258951 gtctggtgggccgatcacttttgattcgagatcaggagttagttctttg 33258903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 43 - 174
Target Start/End: Original strand, 25991936 - 25992066
Alignment:
Q  43 tctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatactatagtctggtgggtcaatc 142  Q
    ||||||||||||||| |||||||  |||||| | ||| ||||||||||||  |  |||| |||| || ||| |||| | ||| ||||||||||| |||||    
T  25991936 tctagctgcaatctt-gtttgacacgatttgatgtttttctggtgtaccgaagatgaggagtgcccttctattttggtgctaaagtctggtgggccaatc 25992034  T
Q  143 acttttgattcgagatcgggagttagttcttt 174  Q
     ||||||||||||||||| |||| ||||||||    
T  25992035 gcttttgattcgagatcgagagtcagttcttt 25992066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 175
Target Start/End: Complemental strand, 14302602 - 14302451
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatac 122  Q
    |||||||||||||||| | |||||||||||| | | ||||| | |||| |||| ||||||||||||| || ||| ||||| ||| || ||  |||| | |    
T  14302602 ttcgagatcgggagtccgtgtctagctgcaagc-tagtttggcgtgatctggtgtttctctggtgtatcgagggtgagggatgcccttctgttttggtcc 14302504  T
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttg 175  Q
    || ||||||||||    |||||||||| |||||||| |||||| |||||||||    
T  14302503 taaagtctggtggactgatcacttttggttcgagattgggagtcagttctttg 14302451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 184
Target Start/End: Complemental strand, 26046136 - 26045976
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgct-aatttgata 121  Q
    ||||||| |||||||||| | ||||||||||||||  |||| | ||||||||| ||||||||||||||| |||   ||||||||  |  | | |||| |     
T  26046136 ttcgagaccgggagtcggtggctagctgcaatctta-tttggcgtgatttggtgtttctctggtgtacc-gggttaaggggtgcctttttgagtttggtc 26046039  T
Q  122 ctatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    ||| |||||||||   | ||||||||||||||||||||||||||||||  |||| ||||||||    
T  26046038 ctaaagtctggtgaaccgatcacttttgattcgagatcgggagttagtgttttggctcaagtt 26045976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 39184256 - 39184208
Alignment:
Q  127 gtctggtgggtcaatcacttttgattcgagatcgggagttagttctttg 175  Q
    |||||||||| | |||||||||||||||||||||| ||| |||||||||    
T  39184256 gtctggtgggccgatcacttttgattcgagatcggaagtcagttctttg 39184208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 184
Target Start/End: Complemental strand, 22675375 - 22675336
Alignment:
Q  145 ttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    ||||||||||||||||||||| ||||||||| ||||||||    
T  22675375 ttttgattcgagatcgggagtcagttctttggctcaagtt 22675336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 21402903 - 21402853
Alignment:
Q  130 tggtgggtcaatcacttttgattcgagatcgggagttagttctttgactca 180  Q
    ||||||| | |||||||||  ||||||||||||||| ||||||||||||||    
T  21402903 tggtgggccgatcacttttagttcgagatcgggagtcagttctttgactca 21402853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 184
Target Start/End: Complemental strand, 39024516 - 39024462
Alignment:
Q  130 tggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    |||||| |||||| |||||||||||||||||||||| | |||||||  |||||||    
T  39024516 tggtggctcaatcgcttttgattcgagatcgggagtcacttctttggttcaagtt 39024462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 9e-66; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 20611686 - 20611864
Alignment:
Q  18 ttggattcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaattt 117  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  20611686 ttggtttcgagatcaggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgccctgctaattt 20611785  T
Q  118 gatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggct 196  Q
      ||||||||| || |||| | |||| ||||||||||||||||||||| |||||||||||| |||||| ||||||||||    
T  20611786 cgtactatagtttgttgggccgatcatttttgattcgagatcgggagtcagttctttgacttaagttggtttttgggct 20611864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 2392684 - 2392501
Alignment:
Q  18 ttggattcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaattt 117  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  2392684 ttggcttcaagatcgggagtcggggtctagctgcaatctttgtttgacttggtttggttttactctggtgtaccgggggcgaggggtgccctgctaattt 2392585  T
Q  118 gatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggctctgtg 201  Q
    | |||||||| |||||||  | ||||||||||||||||||| || ||| ||||||||| || |||||| |||||||||| ||||    
T  2392584 ggtactatagcctggtggaccgatcacttttgattcgagattggaagtcagttctttgtcttaagttggtttttgggctttgtg 2392501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 34475932 - 34475749
Alignment:
Q  18 ttggattcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaattt 117  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||    
T  34475932 ttggcttcgagatcgggagtcggggtctagctgcaatttttgtttgacttggtttgatttttctctggtgtaccgggggcgaggggtgccctgctaattt 34475833  T
Q  118 gatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggctctgtg 201  Q
    | | ||||||||||||||| | |||||||||||||||||||||||||| |  |||| || | |||||| |||||||||| ||||    
T  34475832 gtttctatagtctggtgggccgatcacttttgattcgagatcgggagtcaaatcttggaattaagttgatttttgggctttgtg 34475749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 19176406 - 19176583
Alignment:
Q  18 ttggattcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaattt 117  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| | ||||| ||| ||||||||||    
T  19176406 ttggcttcgagatcaggagtcggggtctagctgcaatctttgtttgacttaatttggtttttctctgatgtaccgggagtgaggg-tgccctgctaattt 19176504  T
Q  118 gatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggct 196  Q
    | | ||| ||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  19176505 ggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggct 19176583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 2394431 - 2394255
Alignment:
Q  18 ttggattcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaattt 117  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  2394431 ttggcttcaagatcgggagtcggggtctagctgcaatctttgtttgacttggtttggttttactctggtgtaccgggggcgaggggtgccctgctaattt 2394332  T
Q  118 gatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttggg 194  Q
    | |||||||| |||||||  | ||||||||||||||||||| || ||| ||||||||| || |||||| ||||||||    
T  2394331 ggtactatagcctggtggaccgatcacttttgattcgagattggaagtcagttctttgtcttaagttggtttttggg 2394255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 23328521 - 23328354
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatac 122  Q
    ||||||||||||||| || ||||||||||||| ||||||||||||||| |||| || ||||||||||||||||||||||||||| ||| | ||||| | |    
T  23328521 ttcgagatcgggagttggtgtctagctgcaat-tttgtttgacttgatatggtgtt-ctctggtgtaccgggggcgaggggtgccctgttgatttggttc 23328424  T
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttg 192  Q
    || ||| ||||||  | ||||||||||||||||||||||||||||| | |||| ||||||||| ||||||    
T  23328423 taaagtttggtggaccgatcacttttgattcgagatcgggagttagctttttggctcaagttggtttttg 23328354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 45163752 - 45163941
Alignment:
Q  18 ttggattcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctgg----tgtaccgggggcgaggggtgcgctgcta 113  Q
    |||| ||| ||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||| |    ||||||| ||||||||||||| ||||||    
T  45163752 ttggcttcaagatcggaagtcggggtctagctgcaatctttgtttgacttggtttgatttttctctagtgcatgtaccgagggcgaggggtgccctgcta 45163851  T
Q  114 atttgatactatagtct--ggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggctctgtg 201  Q
    ||||| |||||||||||   ||||| | |||||||||||||||||||| | ||| |||| |||| || |||||| |||||||||| ||||    
T  45163852 atttggtactatagtcttgtgtgggccgatcacttttgattcgagatcagaagtcagttttttgtcttaagttggtttttgggctttgtg 45163941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 47235619 - 47235729
Alignment:
Q  18 ttggattcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaattt 117  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||| ||||||||||    
T  47235619 ttggcttcgagatcgggagtcagggtctagctgcaatctttgtttgacttggtttggtttttctccagtgtaccgggggcgaggggtgccctgctaattt 47235718  T
Q  118 gatactatagt 128  Q
    |  ||||||||    
T  47235719 gggactatagt 47235729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 76 - 196
Target Start/End: Complemental strand, 9584173 - 9584053
Alignment:
Q  76 ttttctctggtgtaccgggggcgag-gggtgcgctgctaatttgatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttcttt 174  Q
    |||||||| |||||||||||| ||| |||||| ||||||||||||||||| |||||||||| || |||||||||||||||||||||||||| ||||||||    
T  9584173 ttttctcttgtgtaccggggg-gagagggtgccctgctaatttgatactaaagtctggtggatcgatcacttttgattcgagatcgggagtcagttcttt 9584075  T
Q  175 gactcaagttgttttttgggct 196  Q
    | |||||| || ||||||||||    
T  9584074 gtctcaagatggtttttgggct 9584053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 23 - 184
Target Start/End: Original strand, 25647593 - 25647753
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatac 122  Q
    ||||||| |||||||||| ||||||||||||| | |||||| | ||||||||| |||||||||||||||||| | || |||||| || || ||||| | |    
T  25647593 ttcgagaacgggagtcggtgtctagctgcaat-tctgtttggcgtgatttggtgtttctctggtgtaccgggagtgaagggtgcccttctgatttggtcc 25647691  T
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    || ||||||  ||| | ||||||||||||||||||||||||||| |||||||| || |||||    
T  25647692 taaagtctgacgggcctatcacttttgattcgagatcgggagttggttctttggcttaagtt 25647753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 123 - 201
Target Start/End: Original strand, 17550965 - 17551043
Alignment:
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggctctgtg 201  Q
    |||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||    
T  17550965 tatagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggctttgtg 17551043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 23 - 196
Target Start/End: Complemental strand, 40023743 - 40023572
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatac 122  Q
    ||||||||||| ||| || |||||||||||||| |  ||||||||||| |||| || |||| |||||||||||||||||| ||| ||||| ||||  |      
T  40023743 ttcgagatcggaagttggtgtctagctgcaatcatgttttgacttgatatggtgtt-ctctagtgtaccgggggcgaggg-tgccctgctgattttgttt 40023646  T
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggct 196  Q
    || ||||||||||  | ||||||||||||||||||||||||||   ||||||| || |||||| ||||||||||    
T  40023645 taaagtctggtggaccgatcacttttgattcgagatcgggagtcgattctttggcttaagttggtttttgggct 40023572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 23 - 175
Target Start/End: Original strand, 37123291 - 37123442
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatac 122  Q
    |||||||||||||||||| ||||||||||||| |||||||| | ||||||||| |||||||| |||||||  || ||||||||| ||  |  |||| | |    
T  37123291 ttcgagatcgggagtcggtgtctagctgcaat-tttgtttggcgtgatttggtgtttctctgatgtaccgaaggagaggggtgcccttatgttttggtcc 37123389  T
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttg 175  Q
    || | | ||||||| | ||||||||||||||||||| |||||| |||||||||    
T  37123390 taaattttggtgggccgatcacttttgattcgagattgggagtcagttctttg 37123442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 112 - 192
Target Start/End: Original strand, 43012372 - 43012452
Alignment:
Q  112 taatttgatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttg 192  Q
    ||||||| | ||| ||||||||||  | |||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  43012372 taatttggttctaaagtctggtggcccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttg 43012452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 23 - 184
Target Start/End: Original strand, 14193848 - 14194009
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggttt-ttctctggtgtaccgggggcgaggggtgcgctgctaatttgata 121  Q
    ||||| |||||||||||| |||||||| |||| | || ||| | ||||||||| | |||| |||||||||||| | ||||||||| || || ||||| |     
T  14193848 ttcgatatcgggagtcggtgtctagctacaat-tctgcttggcgtgatttggtgtgttctttggtgtaccgggagtgaggggtgcccttctgatttggtc 14193946  T
Q  122 ctatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    ||| ||||||| ||  | ||||||||||||||||||| ||||||  |||||||| ||||||||    
T  14193947 ctaaagtctggcggaccgatcacttttgattcgagattgggagtcggttctttggctcaagtt 14194009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 175
Target Start/End: Complemental strand, 14755435 - 14755286
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatac 122  Q
    ||||||||||||||||||  ||||||||||||||| ||||  |  | |||||| ||||||||||||||||  || ||||||||| ||  |  |||  | |    
T  14755435 ttcgagatcgggagtcggtatctagctgcaatctt-gtttcgcgcgttttggtgtttctctggtgtaccgaaggtgaggggtgccctttt--ttttgtgc 14755339  T
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttg 175  Q
    || ||||||||||| | |||||||||||||| ||||||||||| |||||||||    
T  14755338 taaagtctggtgggccgatcacttttgattcaagatcgggagtcagttctttg 14755286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 33144019 - 33143970
Alignment:
Q  126 agtctggtgggtcaatcacttttgattcgagatcgggagttagttctttg 175  Q
    |||||||||| || |||||||||||||||||||||||||| |||||||||    
T  33144019 agtctggtggatcgatcacttttgattcgagatcgggagtcagttctttg 33143970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 196
Target Start/End: Original strand, 45398776 - 45398877
Alignment:
Q  95 ggcgaggggtgcgctgctaatttgatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttggg 194  Q
    |||||||||||| ||||| |||||    || ||||||||||  | ||||||||||||||||||||| |||| || ||||||| | |||||| ||||||||    
T  45398776 ggcgaggggtgccctgctgatttggatttaaagtctggtggaccgatcacttttgattcgagatcgagagtcagctctttgatttaagttggtttttggg 45398875  T
Q  195 ct 196  Q
    ||    
T  45398876 ct 45398877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 4464107 - 4464026
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgc 106  Q
    |||||||||||||||||| |||||| ||||||| |||| || | ||||||||| ||||||| |||||||| ||| |||||||||    
T  4464107 ttcgagatcgggagtcggtgtctagttgcaatc-ttgtgtggcgtgatttggtgtttctct-gtgtaccgagggtgaggggtgc 4464026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 184
Target Start/End: Original strand, 5556580 - 5556639
Alignment:
Q  125 tagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    |||||||||||| | ||| |||||||||||||||||||||| |||||||||  |||||||    
T  5556580 tagtctggtggggcgatcgcttttgattcgagatcgggagtcagttctttggttcaagtt 5556639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 19295935 - 19295877
Alignment:
Q  126 agtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    ||||||||||| | |||||||||||||||| ||||| ||||||||  ||||||||||||    
T  19295935 agtctggtgggcctatcacttttgattcgatatcggaagttagtttcttgactcaagtt 19295877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 47945717 - 47945775
Alignment:
Q  126 agtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    |||| |||||| | |||||||||||||||||||||||||| |||| |||| ||||||||    
T  47945717 agtccggtgggccgatcacttttgattcgagatcgggagtcagttatttggctcaagtt 47945775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 1652942 - 1652898
Alignment:
Q  140 atcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    |||||||||||||||||||| |||||||||||||||  |||||||    
T  1652942 atcacttttgattcgagatcaggagttagttctttggttcaagtt 1652898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 20710778 - 20710734
Alignment:
Q  126 agtctggtgggtcaatcacttttgattcgagatcgggagttagtt 170  Q
    ||||||||||| | ||||||||||||||||||||||||| |||||    
T  20710778 agtctggtgggccgatcacttttgattcgagatcgggagctagtt 20710734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 165
Target Start/End: Original strand, 14879446 - 14879485
Alignment:
Q  126 agtctggtgggtcaatcacttttgattcgagatcgggagt 165  Q
    ||||||||||| | ||||||||||||||||||||||||||    
T  14879446 agtctggtgggccgatcacttttgattcgagatcgggagt 14879485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 30127273 - 30127332
Alignment:
Q  126 agtctggtgggtcaatcacttttgattcgagatcgggagttagttct-ttgactcaagtt 184  Q
    ||||||||| | | ||| |||||||||||||||||||||| |||||| ||||||||||||    
T  30127273 agtctggtgagccgatcgcttttgattcgagatcgggagtcagttctcttgactcaagtt 30127332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 201
Target Start/End: Original strand, 47235729 - 47235784
Alignment:
Q  146 tttgattcgagatcgggagttagttctttgactcaagttgttttttgggctctgtg 201  Q
    ||||||||||||||| ||||  ||||||||||| |||||| |||||||||| ||||    
T  47235729 tttgattcgagatcgagagtcggttctttgacttaagttggtttttgggctttgtg 47235784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 196
Target Start/End: Complemental strand, 823603 - 823435
Alignment:
Q  27 agatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatactata 126  Q
    ||||| ||||| || |||||| ||||||||| ||||| |||| | |||| ||||||||||| |||| |||  | |||||| || | |||||| |  |  |    
T  823603 agatcaggagttggtgtctagttgcaatctt-gtttggcttgttatggtgtttctctggtggaccgtgggtaaagggtgcccttcaaatttggttatgaa 823505  T
Q  127 gtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggct 196  Q
    | ||  |||| | ||||||||||||||||||||| |||| |||| ||| | ||||||| | |||||||||    
T  823504 gactaatgggccgatcacttttgattcgagatcgagagtcagttgtttcattcaagttttgttttgggct 823435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 39021342 - 39021297
Alignment:
Q  130 tggtgggtcaatcacttttgattcgagatcgggagttagttctttg 175  Q
    ||||||| | ||||||||||||||||| |||||||| |||||||||    
T  39021342 tggtgggccgatcacttttgattcgaggtcgggagtcagttctttg 39021297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 163
Target Start/End: Original strand, 31482880 - 31482932
Alignment:
Q  111 ctaatttgatactatagtctggtgggtcaatcacttttgattcgagatcggga 163  Q
    |||||||| | ||||||||||| |||   ||||||||||||||||||||||||    
T  31482880 ctaatttggttctatagtctggcgggcggatcacttttgattcgagatcggga 31482932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 1e-64; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 30964344 - 30964520
Alignment:
Q  18 ttggattcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaattt 117  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  30964344 ttggcttcgagatcggaagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgagggcgaggggtgccctgctaattt 30964443  T
Q  118 gatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttggg 194  Q
    | ||||||| |||| |||| | ||||||||||||||| ||||||||||  |||||||||||||||||| ||||||||    
T  30964444 ggtactataatctgatgggccgatcacttttgattcgtgatcgggagtccgttctttgactcaagttggtttttggg 30964520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 4305628 - 4305811
Alignment:
Q  18 ttggattcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaattt 117  Q
    |||| |||||||||||||||||||| |||| |||||||||||||||||| ||||| |||||||||||||||||||||||| || ||||| ||||||||||    
T  4305628 ttggcttcgagatcgggagtcgggggctagttgcaatctttgtttgactggatttcgtttttctctggtgtaccgggggcaagcggtgccctgctaattt 4305727  T
Q  118 gatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggctctgtg 201  Q
    | ||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||| ||||    
T  4305728 ggtactatagtctggtggggcgatcacttttgattcgagatcgggagttagttctttgtctcaagttggtttttaggctttgtg 4305811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 8254930 - 8255108
Alignment:
Q  18 ttggattcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaattt 117  Q
    |||| ||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8254930 ttggcttcgagatcgggagtcgaggtctagctgtaatctttgtttcacttgatttggtttttctctggtgtaccgggggcgaggggtgccctgctaattt 8255029  T
Q  118 gatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggct 196  Q
    | ||||| ||||||||||| | |||||||||||| ||||||| | ||| ||||||||||||||||||| ||||||||||    
T  8255030 ggtactaaagtctggtgggccgatcacttttgatccgagatcagaagtcagttctttgactcaagttggtttttgggct 8255108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 8268348 - 8268526
Alignment:
Q  18 ttggattcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaattt 117  Q
    |||| ||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8268348 ttggcttcgagatcgggagtcgaggtctagctgtaatctttgtttcacttgatttggtttttctctggtgtaccgggggcgaggggtgccctgctaattt 8268447  T
Q  118 gatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggct 196  Q
    | ||||| ||||||||||| | |||||||||||| ||||||| | ||| ||||||||||||||||||| ||||||||||    
T  8268448 ggtactaaagtctggtgggccgatcacttttgatccgagatcagaagtcagttctttgactcaagttggtttttgggct 8268526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 23 - 194
Target Start/End: Complemental strand, 30167736 - 30167566
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatac 122  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||| | |||||| || ||| ||||||  ||||||||| ||||  ||||| ||     
T  30167736 ttcgagatcgggagtcggggtctagctacaatctttgtttgatttgatttaggttttctttgatgtgccggggt-gaggggtgccctgcctatttggtat 30167638  T
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttggg 194  Q
    |||||||  ||||||| ||||||||||||||||||||||||||  |||||||||||||||||| ||||||||    
T  30167637 tatagtcaagtgggtcgatcacttttgattcgagatcgggagtcggttctttgactcaagttgatttttggg 30167566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 184
Target Start/End: Original strand, 25753081 - 25753241
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatac 122  Q
    |||||||||||||||||| |||||||||||||||| ||||| | |||| |||| ||||||||||||||||| || |||| |||| |  || ||||| | |    
T  25753081 ttcgagatcgggagtcggtgtctagctgcaatctt-gtttggcgtgatgtggtgtttctctggtgtaccggaggtgaggagtgcccgtcttatttggtcc 25753179  T
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    || ||||||||||| | |||||||||||||||||||||||||| ||||||||| ||||||||    
T  25753180 taaagtctggtggggcgatcacttttgattcgagatcgggagtcagttctttggctcaagtt 25753241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 184
Target Start/End: Complemental strand, 53823593 - 53823433
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatac 122  Q
    |||||||||||||||||| ||||| |||||||||| | ||| ||||| ||||| ||||||||||||||||| || ||||||||| || || ||||| |      
T  53823593 ttcgagatcgggagtcggtgtctaactgcaatctt-gcttggcttgacttggtgtttctctggtgtaccggaggtgaggggtgcccttctgatttggtca 53823495  T
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    || ||||||||||  |||||||||||||||||||||||||||| ||||||||| ||||||||    
T  53823494 taaagtctggtggaccaatcacttttgattcgagatcgggagtcagttctttggctcaagtt 53823433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 23 - 196
Target Start/End: Complemental strand, 31050833 - 31050662
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatac 122  Q
    ||||||| |||||||||| | |||||||||||| | |||||||||||| |||| || || || ||||||||||||||||||||| || || ||||| | |    
T  31050833 ttcgagaccgggagtcggtgactagctgcaatcct-gtttgacttgatatggtgtt-ctttgatgtaccgggggcgaggggtgccctactgatttggttc 31050736  T
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggct 196  Q
    || ||||||||||| | |||||||||||||||||||||| |||||| ||||||  |  ||||| ||||||||||    
T  31050735 taaagtctggtgggccgatcacttttgattcgagatcggaagttaggtctttggtttgagttggtttttgggct 31050662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 23 - 196
Target Start/End: Original strand, 2825693 - 2825864
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatac 122  Q
    |||||||| | |||| || |||||||||||||| | |||||||||||| |||| || ||||||||||||| ||||||||||||| ||||| ||||| | |    
T  2825693 ttcgagattgagagttggtgtctagctgcaatcat-gtttgacttgatatggtgtt-ctctggtgtaccgagggcgaggggtgctctgctgatttggttc 2825790  T
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggct 196  Q
    || |||| |||||| | |||| ||||||||||||||||||| | |  |||||| |||||  || ||||||||||    
T  2825791 taaagtccggtgggccgatcatttttgattcgagatcgggaatcacctctttggctcaatgtggtttttgggct 2825864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 23 - 165
Target Start/End: Complemental strand, 39421185 - 39421044
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatac 122  Q
    ||||||||||||| |||| |||||||||||||||| ||||| | ||||||||| |||||||  ||||| | ||| ||||||||| || || || || |      
T  39421185 ttcgagatcgggaatcggtgtctagctgcaatctt-gtttggcgtgatttggtgtttctctaatgtactgagggtgaggggtgcccttctgatatggtct 39421087  T
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagt 165  Q
    ||||| |||||||| | ||||||||||||||||||||||||||    
T  39421086 tatagcctggtgggccgatcacttttgattcgagatcgggagt 39421044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 23 - 184
Target Start/End: Complemental strand, 19815396 - 19815236
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatac 122  Q
    |||||||||| ||||||| |||||||||||||| ||||||| |||||| | || ||| ||||||  |||||||| ||||||||| || ||  |||| | |    
T  19815396 ttcgagatcgagagtcggtgtctagctgcaatc-ttgtttggcttgatattgtatttttctggttgaccgggggtgaggggtgcccttctgttttggtcc 19815298  T
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    || ||||||||||  | || |||||| |||||||||| ||||| ||||||||| ||||||||    
T  19815297 taaagtctggtggaccgattactttttattcgagatcaggagtcagttctttggctcaagtt 19815236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 23 - 184
Target Start/End: Original strand, 19673010 - 19673169
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatac 122  Q
    |||||||||||||||| | |||||||||||||| ||||||| |||||| || | ||||||||||  | |||||| ||||||||| || ||  |||| | |    
T  19673010 ttcgagatcgggagtcagtgtctagctgcaatc-ttgtttggcttgatatgatatttctctggttgatcgggggtgaggggtgcccttctgttttggtcc 19673108  T
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    || ||||||||||  || || ||||| |||||||||| ||||| ||||||||| ||||||||    
T  19673109 taaagtctggtggaccattccctttt-attcgagatcaggagtcagttctttggctcaagtt 19673169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 184
Target Start/End: Complemental strand, 22811331 - 22811172
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatac 122  Q
    ||||||||||| | | || |||||| |||||| ||||||||   ||||||||| ||||||||||||| |||||  |||| |||| || || ||||| |      
T  22811331 ttcgagatcggaacttggtgtctagttgcaat-tttgtttggtgtgatttggtgtttctctggtgtatcggggt-gaggagtgcccttctgatttggtct 22811234  T
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    || ||||||||||| | |||| |||| |||||||||||||||| ||||||||| ||||||||    
T  22811233 taaagtctggtgggccgatcattttttattcgagatcgggagtcagttctttggctcaagtt 22811172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 196
Target Start/End: Complemental strand, 46698904 - 46698784
Alignment:
Q  77 tttctctggtgtaccgggggcgaggggtgcgctgctaatttgatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttga 176  Q
    ||||| ||||| |||| ||| | ||||||| || || ||||| | || |||||||||||| | ||  |||||||||||||||||||||| |||||||||     
T  46698904 tttctttggtggaccgagggtgtggggtgcccttctgatttggtcctgtagtctggtgggccgattgcttttgattcgagatcgggagtcagttctttgg 46698805  T
Q  177 ctcaagttgt-tttttgggct 196  Q
     ||||||| | ||||||||||    
T  46698804 ttcaagttttgtttttgggct 46698784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 175
Target Start/End: Complemental strand, 2061857 - 2061759
Alignment:
Q  77 tttctctggtgtaccgggggcgaggggtgcgctgctaatttgatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttg 175  Q
    ||||||||||||| ||  || ||||||||| ||  | ||||||| ||| |||||||||||   ||||||||||||||||||| | |||| |||||||||    
T  2061857 tttctctggtgtatcgaaggtgaggggtgccctcttgatttgatcctaaagtctggtgggctgatcacttttgattcgagattgagagtcagttctttg 2061759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 6600015 - 6599945
Alignment:
Q  126 agtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggct 196  Q
    ||||||||||| | ||| ||||||||| ||||||||||||  ||||||||| ||||||| | |||||||||    
T  6600015 agtctggtgggccgatcgcttttgattagagatcgggagtcggttctttgattcaagttttgttttgggct 6599945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 21387274 - 21387204
Alignment:
Q  126 agtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggct 196  Q
    ||||||||||  | |||||||||||||||||||||| ||| ||||||| || ||||||| || ||||||||    
T  21387274 agtctggtggaccgatcacttttgattcgagatcggaagtcagttcttcgattcaagtttttatttgggct 21387204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 39041344 - 39041283
Alignment:
Q  126 agtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgtt 187  Q
    ||||||||||| | |||||||||||||||||||| ||||| ||||  | |||||||||||||    
T  39041344 agtctggtgggccgatcacttttgattcgagatcaggagtcagtttctagactcaagttgtt 39041283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 38637305 - 38637253
Alignment:
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttg 175  Q
    |||||||||| ||| | |||||||||||||||||||||||||| | |||||||    
T  38637305 tatagtctggcgggccgatcacttttgattcgagatcgggagtcaattctttg 38637253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 26474851 - 26474910
Alignment:
Q  130 tggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgtttt 189  Q
    ||||||| | ||||||||||||||||||||| |||||||||  ||| |||||| ||||||    
T  26474851 tggtgggccgatcacttttgattcgagatcgagagttagtttcttgtctcaagctgtttt 26474910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 36962685 - 36962627
Alignment:
Q  126 agtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttg 185  Q
    ||||||||||| | || ||||||||||||||||| ||||| || ||||||||||||||||    
T  36962685 agtctggtgggccgattacttttgattcgagatcaggagtcag-tctttgactcaagttg 36962627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 189
Target Start/End: Complemental strand, 40813851 - 40813788
Alignment:
Q  126 agtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgtttt 189  Q
    ||||||||||| | |||||||||||||||||||||||||  | || ||||||||| ||| ||||    
T  40813851 agtctggtgggccgatcacttttgattcgagatcgggagccaattttttgactcaggttctttt 40813788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 38929838 - 38929896
Alignment:
Q  126 agtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    |||||| |||| | ||||||||||||||||||||  |||| ||||||||| ||||||||    
T  38929838 agtctgctgggccgatcacttttgattcgagatcaagagtcagttctttggctcaagtt 38929896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 181
Target Start/End: Complemental strand, 41118040 - 41117982
Alignment:
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaa 181  Q
    |||||||||| |||   |||||||||||||||||||||| ||| ||||||||| |||||    
T  41118040 tatagtctggagggaagatcacttttgattcgagatcggaagtaagttctttggctcaa 41117982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 189
Target Start/End: Complemental strand, 2792330 - 2792281
Alignment:
Q  140 atcacttttgattcgagatcgggagttagttctttgactcaagttgtttt 189  Q
    |||||||||||||||||||||| ||| ||||  |||||||||||| ||||    
T  2792330 atcacttttgattcgagatcggaagtcagtttcttgactcaagttttttt 2792281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 19311412 - 19311364
Alignment:
Q  126 agtctggtgggtcaatcacttttgattcgagatcgggagttagttctttg 175  Q
    ||||||||||||| |||||||||||||||||| ||||||| |||| ||||    
T  19311412 agtctggtgggtcgatcacttttgattcgaga-cgggagtcagttatttg 19311364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 53756767 - 53756811
Alignment:
Q  126 agtctggtgggtcaatcacttttgattcgagatcgggagttagtt 170  Q
    ||||||||||| | |||||||||||||||||||||| || |||||    
T  53756767 agtctggtgggccgatcacttttgattcgagatcggaagctagtt 53756811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 9e-60; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 3117395 - 3117579
Alignment:
Q  18 ttggattcgagatcgggagtcggggtctagctgcaatctttgttt-gacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatt 116  Q
    |||| |||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  3117395 ttggcttcgagattgggagtcggggtctagttgcaatctttgttttgacttgatttggtttttctctggtgttccgggggcgaggggtgccctgctaatt 3117494  T
Q  117 tgatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggctctgtg 201  Q
    || |  |||||| ||||||| | |||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||| ||||    
T  3117495 tgttgatatagtatggtgggccgatcacttttgattcaagatcgggagtcagttctttgactcaagttggtttttgggctttgtg 3117579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 23 - 193
Target Start/End: Complemental strand, 16510474 - 16510304
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatac 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||| ||||||||||| | |    
T  16510474 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatatggtttttctctggtgtaccgagggcaaggggtgccctgctaatttggttc 16510375  T
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgg 193  Q
    || ||||| ||||| | ||||||||||||||||||| | |||| |||||||| |||||||||| |||||||    
T  16510374 taaagtctagtgggccgatcacttttgattcgagattgagagtcagttcttttactcaagttggtttttgg 16510304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 26 - 184
Target Start/End: Complemental strand, 20701972 - 20701815
Alignment:
Q  26 gagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatactat 125  Q
    |||||||||| |||| ||||||||||||  |||||||| | |||||||||||||||||||||||||||||| ||||||||| || || ||||| |  | |    
T  20701972 gagatcgggattcggtgtctagctgcaaa-tttgtttggcgtgatttggtttttctctggtgtaccgggggtgaggggtgcccttctgatttggtcattt 20701874  T
Q  126 agtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    || |||||| | | |||||||||||||||||||||||||||||||||||| || |||||    
T  20701873 agactggtgtgccgatcacttttgattcgagatcgggagttagttctttggcttaagtt 20701815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 26 - 156
Target Start/End: Complemental strand, 3880752 - 3880623
Alignment:
Q  26 gagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatactat 125  Q
    ||||||||||||||| |||||||||| ||||| ||||| | ||||||||| |||||||||| ||||| ||| ||| ||||| || || ||||| | |||     
T  3880752 gagatcgggagtcggtgtctagctgctatctt-gtttggcatgatttggtgtttctctggtttaccgagggtgagaggtgcccttctgatttggtcctaa 3880654  T
Q  126 agtctggtgggtcaatcacttttgattcgag 156  Q
    ||| ||||||| | |||||||||||||||||    
T  3880653 agtttggtgggccgatcacttttgattcgag 3880623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 184
Target Start/End: Complemental strand, 32935492 - 32935351
Alignment:
Q  42 gtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatactatagtctggtgggtcaat 141  Q
    ||||||||||||||||  |||| |||| | |||| ||||| || || | |||||| ||||||| | || || ||||| | ||  ||||||||||| | ||    
T  32935492 gtctagctgcaatcttc-tttggcttgttatggtgtttctatgatggatcgggggtgaggggttcccttctgatttggtcctgaagtctggtgggccgat 32935394  T
Q  142 cacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    | |||||||||||||||||||||| ||||||| ||||||||||    
T  32935393 cgcttttgattcgagatcgggagtcagttcttggactcaagtt 32935351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 15132694 - 15132613
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgc 106  Q
    |||||||||||||||||| | ||||||||||||  ||||||||||||| ||| | ||||||| ||||| |||||||||||||||    
T  15132694 ttcgagatcgggagtcggtgactagctgcaatc-ctgtttgacttgatatgg-tgttctctgatgtactgggggcgaggggtgc 15132613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 175
Target Start/End: Original strand, 9223950 - 9224101
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatac 122  Q
    ||||||||||||||| || ||||  ||||||||||  ||||||    |||||| || || ||||| |||||||| ||||| ||| ||  ||| ||| | |    
T  9223950 ttcgagatcgggagttggtgtctttctgcaatcttgttttgaccgactttggtgttcctttggtggaccgggggtgaggg-tgcccttttaagttggtcc 9224048  T
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttg 175  Q
    || |||||||||||   ||| |||||||||||||||||||||| |||||||||    
T  9224049 taaagtctggtgggctgatcgcttttgattcgagatcgggagtcagttctttg 9224101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 26216089 - 26216042
Alignment:
Q  126 agtctggtgggtcaatcacttttgattcgagatcgggagttagttctt 173  Q
    ||||||||||| | |||||||||||||||||||||||||| |||||||    
T  26216089 agtctggtgggccgatcacttttgattcgagatcgggagtcagttctt 26216042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 32316391 - 32316437
Alignment:
Q  138 caatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    |||||||||||||||||||||||| ||| |||||||||| |||||||    
T  32316391 caatcacttttgattcgagatcggtagtaagttctttgattcaagtt 32316437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 34090374 - 34090418
Alignment:
Q  126 agtctggtgggtcaatcacttttgattcgagatcgggagttagtt 170  Q
    ||||||||||||| |||| ||||||||||||||||||||| ||||    
T  34090374 agtctggtgggtcgatcaattttgattcgagatcgggagtcagtt 34090418  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 26534789 - 26534742
Alignment:
Q  126 agtctggtgggtcaatcacttttgattcgagatcgggagttagttctt 173  Q
    ||||||||||| | ||||||||||||||||||| |||||| |||||||    
T  26534789 agtctggtgggccgatcacttttgattcgagattgggagtcagttctt 26534742  T

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Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 184
Target Start/End: Complemental strand, 33968684 - 33968625
Alignment:
Q  125 tagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    |||||| ||||||  ||| |||||||||||||||||||||| |||||||||  |||||||    
T  33968684 tagtctagtgggtagatcgcttttgattcgagatcgggagtcagttctttggttcaagtt 33968625  T

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Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 181
Target Start/End: Original strand, 34105428 - 34105479
Alignment:
Q  130 tggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaa 181  Q
    ||||||| | |||||||||||||||||||||||||| ||||  |||||||||    
T  34105428 tggtgggccgatcacttttgattcgagatcgggagtcagtttcttgactcaa 34105479  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 21266127 - 21266168
Alignment:
Q  129 ctggtgggtcaatcacttttgattcgagatcgggagttagtt 170  Q
    |||||||| | ||| |||||||||||||||||||||||||||    
T  21266127 ctggtgggccgatcgcttttgattcgagatcgggagttagtt 21266168  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 13423491 - 13423535
Alignment:
Q  140 atcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    ||||||||||||||||||||| ||||  |||||||| ||||||||    
T  13423491 atcacttttgattcgagatcgagagtcggttctttggctcaagtt 13423535  T

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Target: scaffold0068 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 35950 - 35772
Alignment:
Q  18 ttggattcgagatcgggagtcggggtctagctgcaatctttgtttgacttgattt-ggtttttctctggtgtaccgggggcgaggggtgcgctgctaatt 116  Q
    |||| ||||||||||||||||| ||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||   |||||||    
T  35950 ttggcttcgagatcgggagtcgaggtctagttgcaatctttgtttgacttaattttggtttttctctggtgtaccgggggcgaggggtgcctagctaatt 35851  T
Q  117 tgatactatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagttgttttttgggct 196  Q
    || |  |||||||| ||||| | |||||||||||||||||||||||||| | |||||||||| |||||| ||||||||||    
T  35850 tggttatatagtctagtgggccgatcacttttgattcgagatcgggagtca-ttctttgacttaagttggtttttgggct 35772  T

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Target: scaffold0050 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 181
Target Start/End: Original strand, 36614 - 36773
Alignment:
Q  21 gattcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgat 120  Q
    ||||||||||| |||||||| ||||||||||||| |||||||| | ||||||||| |||||||||||||||| | | ||||||||| || || ||||| |    
T  36614 gattcgagatcaggagtcggtgtctagctgcaat-tttgtttggcgtgatttggtgtttctctggtgtaccgagagtgaggggtgcccttctgatttggt 36712  T
Q  121 actatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaa 181  Q
     ||| ||||||| |||   |||||||||||||||||||||||||| ||||||||| |||||    
T  36713 cctaaagtctggcgggctgatcacttttgattcgagatcgggagtcagttctttgtctcaa 36773  T

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Target: scaffold0200 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 23 - 184
Target Start/End: Original strand, 19291 - 19452
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatac 122  Q
    |||||||||||||||||| ||||||||||| ||||  |||| ||| ||||| | |||||||||| ||||   || ||||||||| || || ||||| | |    
T  19291 ttcgagatcgggagtcggtgtctagctgcattcttgttttggcttaatttgatgtttctctggtataccaaaggtgaggggtgcccttctgatttggtcc 19390  T
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    || ||||||||||| | |||||||||||||||||||||| ||| ||||||||| ||||||||    
T  19391 taaagtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggctcaagtt 19452  T

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Target: scaffold0119 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 23 - 184
Target Start/End: Complemental strand, 42311 - 42150
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatac 122  Q
    |||||||||||||||||  ||||||||||| ||||  |||| ||| ||||| | |||||||||| ||||   || ||||||||| || || ||||  | |    
T  42311 ttcgagatcgggagtcgatgtctagctgcattcttgttttggcttaatttgatgtttctctggtataccaaaggtgaggggtgcccttctgatttagtcc 42212  T
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    || ||||||||||| | |||||||||||||||||||||| ||| ||||||||| ||||||||    
T  42211 taaagtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggctcaagtt 42150  T

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Target: scaffold0063 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 161
Target Start/End: Original strand, 58036 - 58173
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgatac 122  Q
    |||||||||||||||||  |||||||||||||| ||||||| | ||||||||| |||||||||||||||  ||| |   ||||| || |  ||||| | |    
T  58036 ttcgagatcgggagtcgttgtctagctgcaatc-ttgtttggcgtgatttggtgtttctctggtgtacctagggtgtatggtgcccttcagatttggtcc 58134  T
Q  123 tatagtctggtgggtcaatcacttttgattcgagatcgg 161  Q
    || ||| ||||||| | |||||||||||||| |||||||    
T  58135 taaagtttggtgggccgatcacttttgattcaagatcgg 58173  T

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Target: scaffold1613 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 175
Target Start/End: Complemental strand, 1188 - 1038
Alignment:
Q  23 ttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgattt-ggtttttctctggtgtaccgggggcgaggggtgcgctgctaatttgata 121  Q
    |||||||| |||||| || |||||||||||||||| |||||| ||||||| ||| ||||||||||| || |||   ||||||| | || || ||||| |     
T  1188 ttcgagattgggagttggtgtctagctgcaatctt-gtttga-ttgattttggtgtttctctggtggactgggaatgaggggtcc-cttctgatttggtc 1092  T
Q  122 ctatagtctggtgggtcaatcacttttgattcgagatcgggagttagttctttg 175  Q
     |  ||||||||||| | ||| |||||||||||||||||||||| |||||||||    
T  1091 atgaagtctggtgggccgatcgcttttgattcgagatcgggagtcagttctttg 1038  T

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Target: scaffold0620 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 3841 - 3896
Alignment:
Q  126 agtctggtgggtcaatcacttttgattcgagatcgggagttagttctttgactcaa 181  Q
    ||||||||||| | |||| ||||||||||||||||||||| ||||  |||||||||    
T  3841 agtctggtgggccgatcaattttgattcgagatcgggagtcagtttcttgactcaa 3896  T

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Target: scaffold0062 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 71752 - 71798
Alignment:
Q  138 caatcacttttgattcgagatcgggagttagttctttgactcaagtt 184  Q
    |||||||||||||||||||||||  |||||||||||||  |||||||    
T  71752 caatcacttttgattcgagatcgtcagttagttctttgtttcaagtt 71798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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