View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12250_low_1 (Length: 445)

Name: NF12250_low_1
Description: NF12250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12250_low_1
NF12250_low_1
[»] scaffold0144 (2 HSPs)
scaffold0144 (169-427)||(35481-35739)
scaffold0144 (1-174)||(35812-35985)
[»] chr6 (17 HSPs)
chr6 (1-145)||(16656363-16656507)
chr6 (1-174)||(16795485-16795658)
chr6 (1-174)||(16869657-16869830)
chr6 (202-415)||(16870011-16870215)
chr6 (202-413)||(16795093-16795304)
chr6 (1-122)||(17067868-17067989)
chr6 (1-122)||(16985822-16985943)
chr6 (230-414)||(16655944-16656128)
chr6 (327-427)||(16785141-16785241)
chr6 (18-122)||(16786330-16786434)
chr6 (202-415)||(16779057-16779270)
chr6 (18-109)||(16779552-16779643)
chr6 (227-274)||(16985472-16985519)
chr6 (227-283)||(17067506-17067562)
chr6 (234-273)||(17096945-17096984)
chr6 (367-415)||(16558315-16558363)
chr6 (169-205)||(16795376-16795412)
[»] chr3 (6 HSPs)
chr3 (202-415)||(38941421-38941631)
chr3 (2-122)||(7054945-7055065)
chr3 (1-108)||(38941031-38941138)
chr3 (202-283)||(38943173-38943254)
chr3 (228-415)||(7055369-7055556)
chr3 (375-426)||(38943019-38943070)
[»] scaffold0133 (6 HSPs)
scaffold0133 (1-108)||(6856-6963)
scaffold0133 (202-274)||(16093-16165)
scaffold0133 (202-273)||(6523-6594)
scaffold0133 (237-415)||(10741-10919)
scaffold0133 (27-122)||(11217-11312)
scaffold0133 (374-415)||(15952-15993)
[»] scaffold0256 (2 HSPs)
scaffold0256 (1-122)||(7522-7643)
scaffold0256 (368-415)||(7040-7087)
[»] chr8 (2 HSPs)
chr8 (28-122)||(13376454-13376548)
chr8 (367-416)||(13375962-13376011)


Alignment Details
Target: scaffold0144 (Bit Score: 183; Significance: 8e-99; HSPs: 2)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 169 - 427
Target Start/End: Complemental strand, 35739 - 35481
Alignment:
Q  169 attaccagagcagttgttgcaaagtttgagttctcttaagacactttatatccatgattgtccacagtttgtttttccacataacatgaccaatctaact 268  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||  ||||    |  ||||||||||||||||||||||||||||||||||||||||||    
T  35739 attatcagagcagttgttgcaaggtttgagttctcttaagacactaaatattggaggctgtccacagtttgtttttccacataacatgaccaatctaact 35640  T
Q  269 tccctttgtgaactgattgtctccagaggtgatgaaaaaatactagaaagcttagaagacatcccctcactgcaatctttgtatctgaacgaattccttt 368  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||    
T  35639 tccctttgtgaactgattgtctcaaggggtgatgaaaaaatactagaaagcttagaagacatcccctcactgcaatctttgtatctgaatcatttccttt 35540  T
Q  369 ctctaacatcctttccggactgtttgggtgcaatgacttctcttcaaaatttacaaatt 427  Q
    |||||| ||||||||| |||||||||||||| ||||||||||||||||||||| |||||    
T  35539 ctctaagatcctttccagactgtttgggtgccatgacttctcttcaaaatttaaaaatt 35481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 35985 - 35812
Alignment:
Q  1 acaacttttagagtttgatataagaaatgtccccaaacttacattgccaccccttccatctgttaaatcactttctgctaaaggaggaaatgaagagtta 100  Q
    |||||||||| | || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  35985 acaacttttaaatttagatataacaaatgtccccaaacttacattgccaccccttccatctgttaaatcactttctgctaaaggaggaaattaagagtta 35886  T
Q  101 ttgaagtccattgttaacaacagtaatcttaagtcactttccatacgcaaattttctagactcgtggaattacc 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35885 ttgaagtccattgttaacaacagtaatcttaagtcactttccatacgcaaattttctagactcatggaattacc 35812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 121; Significance: 8e-62; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 16656507 - 16656363
Alignment:
Q  1 acaacttttagagtttgatataagaaatgtccccaaacttacattgccaccccttccatctgttaaatcactttctgctaaaggaggaaatgaagagtta 100  Q
    |||||||||| | || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  16656507 acaacttttaaatttagatataagaaatgtccccaaacttacattgccaccccttgcatctgttaaatcactttttgctaaaggaggaaatgaagagtta 16656408  T
Q  101 ttgaagtccattgttaacaacagtaatcttaagtcactttccata 145  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  16656407 ttgaagtctattgttaacaacagtaatcttaagtcactttccata 16656363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 16795658 - 16795485
Alignment:
Q  1 acaacttttagagtttgatataagaaatgtccccaaacttacattgccaccccttccatctgttaaatcactttctgctaaaggaggaaatgaagagtta 100  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  16795658 acaacttttagagttagatataagaaatgttcccaaacttacattgccaccccttccatctgttaaatcactttgtgctgaaggaggaaatgaagagtta 16795559  T
Q  101 ttgaagtccattgttaacaacagtaatcttaagtcactttccatacgcaaattttctagactcgtggaattacc 174  Q
    |||||||| ||||||||||||||||||||||| ||||||| ||||   |||||| | ||||||  |||||||||    
T  16795558 ttgaagtctattgttaacaacagtaatcttaaatcactttacatattaaaatttgccagactcaaggaattacc 16795485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 16869657 - 16869830
Alignment:
Q  1 acaacttttagagtttgatataagaaatgtccccaaacttacattgccaccccttccatctgttaaatcactttctgctaaaggaggaaatgaagagtta 100  Q
    |||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| ||||||||||||    
T  16869657 acaacttttaaagttacatataagaaatgtccccaaacttacattgccaccccttccatctgttaaatcattttatgctgaaggaggcaatgaagagtta 16869756  T
Q  101 ttgaagtccattgttaacaacagtaatcttaagtcactttccatacgcaaattttctagactcgtggaattacc 174  Q
    ||||||||||||||| |||||||||||||||||||||||  ||||  ||||||| | |||||| ||||||||||    
T  16869757 ttgaagtccattgttgacaacagtaatcttaagtcacttcacatatccaaatttgccagactcatggaattacc 16869830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 202 - 415
Target Start/End: Original strand, 16870011 - 16870215
Alignment:
Q  202 tcttaagacactttatatccatgattgtccacagtttgtttttccacataacatgaccaatctaacttccctttgtgaactgattgtctccagaggtgat 301  Q
    |||||||||||||||||||   || ||||||||||||||||||||||||||||||| |||||||||||||||         |||||||||| | | ||||    
T  16870011 tcttaagacactttatatcagcgactgtccacagtttgtttttccacataacatgaacaatctaacttccct---------gattgtctccggggttgat 16870101  T
Q  302 gaaaaaatactagaaagcttagaagacatcccctcactgcaatctttgtatctgaacgaattcctttctctaacatcctttccggactgtttgggtgcaa 401  Q
    |||||| |||||||||||||||||| |||||||||||| |||  ||||| |||| |  | ||||||||||||||| |||| || |||||||||||| | |    
T  16870102 gaaaaagtactagaaagcttagaaggcatcccctcactacaaagtttgtctctgcaaaatttcctttctctaacagccttgccagactgtttgggtacca 16870201  T
Q  402 tgacttctcttcaa 415  Q
    ||||||||||||||    
T  16870202 tgacttctcttcaa 16870215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 202 - 413
Target Start/End: Complemental strand, 16795304 - 16795093
Alignment:
Q  202 tcttaagacactttatatccatgattgtccacagtttgtttttccacataacatgaccaatctaacttccctttgtgaactgattgtctccagaggtgat 301  Q
    ||||||||||||| |||||    | ||||||||||||||||||||||||||||||| | |||||||||| || || |  |||  ||||| | | ||||||    
T  16795304 tcttaagacacttaatatcatcaactgtccacagtttgtttttccacataacatgaacgatctaacttctctatgggttctgcatgtctacgggggtgat 16795205  T
Q  302 gaaaaaatactagaaagcttagaagacatcccctcactgcaatctttgtatctgaacgaattcctttctctaacatcctttccggactgtttgggtgcaa 401  Q
    ||||||||| ||||| ||||||||| |||||||||||| |||  ||||| |||||   | |||| ||||||||||||||| |||||  |||||||||| |    
T  16795204 gaaaaaatattagaaggcttagaaggcatcccctcactacaaattttgtctctgactaatttcccttctctaacatccttgccggatagtttgggtgcca 16795105  T
Q  402 tgacttctcttc 413  Q
    | ||||||||||    
T  16795104 tcacttctcttc 16795093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 17067989 - 17067868
Alignment:
Q  1 acaacttttagagtttgatataagaaatgtccccaaacttacattgccaccccttccatctgttaaatcactttctgctaaaggaggaaatgaagagtta 100  Q
    |||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||||||||||  | ||||||| || | ||||||||||||||||||||    
T  17067989 acaacttttaaagttaaatataagaaatgtccccaaacttacattgccacccattccatctgtcgagtcactttttgttcaaggaggaaatgaagagtta 17067890  T
Q  101 ttgaagtccattgttaacaaca 122  Q
     ||||||||||| || ||||||    
T  17067889 atgaagtccattatttacaaca 17067868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 16985943 - 16985822
Alignment:
Q  1 acaacttttagagtttgatataagaaatgtccccaaacttacattgccaccccttccatctgttaaatcactttctgctaaaggaggaaatgaagagtta 100  Q
    ||||||||||||||| ||||||| ||| | | | ||| ||||||| ||| |||||||||||||| | |||||||| | | |||||||||||||||| |||    
T  16985943 acaacttttagagttagatataacaaaagcctctaaatttacatttccatcccttccatctgttgagtcactttcggttcaaggaggaaatgaagactta 16985844  T
Q  101 ttgaagtccattgttaacaaca 122  Q
    || |||| ||||| | ||||||    
T  16985843 tttaagttcattggttacaaca 16985822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 230 - 414
Target Start/End: Complemental strand, 16656128 - 16655944
Alignment:
Q  230 ccacagtttgtttttccacataacatgaccaatctaacttccctttgtgaactgattgtctccagaggtgatgaaaaaatactagaaagcttagaagaca 329  Q
    |||||||| ||||||||||||||||||| || ||||||||||||  ||  |||| |  ||||     || ||||||| ||||||||  || |||||| ||    
T  16656128 ccacagttagtttttccacataacatgaacagtctaacttccctccgtcgactggtactctcggattgtaatgaaaacatactagatggcatagaaggca 16656029  T
Q  330 tcccctcactgcaatctttgtatctgaacgaattcctttctctaacatcctttccggactgtttgggtgcaatgacttctcttca 414  Q
    ||||||||||||||  ||||| |||| |  | || | ||| ||||||||||| || |||||||||||||| || |||||||||||    
T  16656028 tcccctcactgcaaagtttgtctctgtattattttccttcactaacatccttgccagactgtttgggtgccatcacttctcttca 16655944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 327 - 427
Target Start/End: Complemental strand, 16785241 - 16785141
Alignment:
Q  327 acatcccctcactgcaatctttgtatctgaacgaattcctttctctaacatcctttccggactgtttgggtgcaatgacttctcttcaaaatttacaaat 426  Q
    |||||||||||||||||| |||| ||||||  || || | ||||||||||||||| || |||||||||||||| ||||||||| | ||| | ||||||||    
T  16785241 acatcccctcactgcaatatttgcatctgattgattttccttctctaacatccttgccagactgtttgggtgccatgacttctgtacaagaattacaaat 16785142  T
Q  427 t 427  Q
    |    
T  16785141 t 16785141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 16786434 - 16786330
Alignment:
Q  18 atataagaaatgtccccaaacttacattgccaccccttccatctgttaaatcactttctgctaaaggaggaaatgaagagttattgaagtccattgttaa 117  Q
    |||||| |||||||||||| |||||| || |  ||||||||| |||| | |||||| ||||||  ||| |||||||||||||||||||||||||| || |    
T  16786434 atataataaatgtccccaagcttacactgtcgtcccttccatatgttgagtcacttactgctagtggaagaaatgaagagttattgaagtccatttttta 16786335  T
Q  118 caaca 122  Q
    |||||    
T  16786334 caaca 16786330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 202 - 415
Target Start/End: Complemental strand, 16779270 - 16779057
Alignment:
Q  202 tcttaagacactttatatccatgattgtccacagtttgtttttccacataacatgaccaatctaacttccctttgtgaactgattgtctccagaggtgat 301  Q
    |||| |||||||| |||||| | | |||| |||||| ||||||||||||||||||| || ||||||||||||| |   |||| |  |||  |   || ||    
T  16779270 tcttgagacacttcatatccgttactgtctacagttagtttttccacataacatgaacagtctaacttcccttcgccgactgctactctggaattgtaat 16779171  T
Q  302 gaaaaaatactagaaagcttagaagacatcccctcactgcaatctttgtatctgaacgaattcctttctctaacatcctttccggactgtttgggtgcaa 401  Q
    || || ||||||||  || |||||| ||||||||||||||||   |||| |||| |  | || | ||| |||||||| || || |||||||||||||| |    
T  16779170 gagaacatactagatggcatagaaggcatcccctcactgcaaaaattgtctctgtatcattttccttcactaacatcattgccagactgtttgggtgcca 16779071  T
Q  402 tgacttctcttcaa 415  Q
    ||||||||||||||    
T  16779070 tgacttctcttcaa 16779057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 16779643 - 16779552
Alignment:
Q  18 atataagaaatgtccccaaacttacattgccaccccttccatctgttaaatcactttctgctaaaggaggaaatgaagagttattgaagtcc 109  Q
    |||||| | ||||||| |||||| ||||||   |||||||||||||  | |||||||||| ||  |||||||||||||| ||||||||||||    
T  16779643 atataacagatgtccctaaacttgcattgcagtcccttccatctgtggagtcactttctgttagtggaggaaatgaagaattattgaagtcc 16779552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 274
Target Start/End: Complemental strand, 16985519 - 16985472
Alignment:
Q  227 tgtccacagtttgtttttccacataacatgaccaatctaacttccctt 274  Q
    |||||||| |||||||||||||||||||||| || |||||||||||||    
T  16985519 tgtccacaatttgtttttccacataacatgaacagtctaacttccctt 16985472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 283
Target Start/End: Complemental strand, 17067562 - 17067506
Alignment:
Q  227 tgtccacagtttgtttttccacataacatgaccaatctaacttccctttgtgaactg 283  Q
    |||||||| || ||||||||||||||||||| || ||||||||||||| || |||||    
T  17067562 tgtccacaattcgtttttccacataacatgaacagtctaacttcccttcgtcaactg 17067506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 273
Target Start/End: Complemental strand, 17096984 - 17096945
Alignment:
Q  234 agtttgtttttccacataacatgaccaatctaacttccct 273  Q
    |||||||||||||||||||||||| || ||||||||||||    
T  17096984 agtttgtttttccacataacatgaacagtctaacttccct 17096945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 415
Target Start/End: Original strand, 16558315 - 16558363
Alignment:
Q  367 ttctctaacatcctttccggactgtttgggtgcaatgacttctcttcaa 415  Q
    |||||||||| |||| || |||||||||||| | |||||||||||||||    
T  16558315 ttctctaacagccttgccagactgtttgggtaccatgacttctcttcaa 16558363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 16795412 - 16795376
Alignment:
Q  169 attaccagagcagttgttgcaaagtttgagttctctt 205  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  16795412 attaacagagcagttgttgcaaggtttgagttctctt 16795376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 8e-28; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 202 - 415
Target Start/End: Original strand, 38941421 - 38941631
Alignment:
Q  202 tcttaagacactttatatccatgattgtccacagtttgtttttccacataacatgaccaatctaacttccctttgtgaactgattgtctccagaggtgat 301  Q
    |||| ||||||||  |||| || ||||||||||||| ||||||||||||||||||| || ||| ||||||||  ||  |||| | ||||   | ||| ||    
T  38941421 tcttgagacacttcgtatcaattattgtccacagttcgtttttccacataacatgaacagtctgacttccctccgtcgactggtagtct---ggggtaat 38941517  T
Q  302 gaaaaaatactagaaagcttagaagacatcccctcactgcaatctttgtatctgaacgaattcctttctctaacatcctttccggactgtttgggtgcaa 401  Q
    ||||| |||||||| |||||||||| ||||||||||||||||  ||||| ||||  ||| || | |||  |||||||||| || ||||| |||||||| |    
T  38941518 gaaaacatactagacagcttagaaggcatcccctcactgcaaaatttgtgtctgttcgattttccttcaataacatccttgccagactggttgggtgcca 38941617  T
Q  402 tgacttctcttcaa 415  Q
    ||||||||||||||    
T  38941618 tgacttctcttcaa 38941631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 2 - 122
Target Start/End: Original strand, 7054945 - 7055065
Alignment:
Q  2 caacttttagagtttgatataagaaatgtccccaaacttacattgccaccccttccatctgttaaatcactttctgctaaaggaggaaatgaagagttat 101  Q
    ||||||||||| || ||| ||| | ||||||| ||||| ||||||||  ||||||||||| || | ||||||||||||   |||||||||||||||||||    
T  7054945 caacttttagacttagatctaacagatgtccctaaactcacattgccgtcccttccatctattgagtcactttctgctcgtggaggaaatgaagagttat 7055044  T
Q  102 tgaagtccattgttaacaaca 122  Q
    ||||||||||| || ||||||    
T  7055045 tgaagtccattttttacaaca 7055065  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 38941031 - 38941138
Alignment:
Q  1 acaacttttagagtttgatataagaaatgtccccaaacttacattgccaccccttccatctgttaaatcactttctgctaaaggaggaaatgaagagtta 100  Q
    |||||||||| |||| |||||||||||||||||||||||| ||||||   |||||||||||||| | ||  ||| |||||  |||||||||||||| |||    
T  38941031 acaacttttaaagttagatataagaaatgtccccaaacttgcattgcagtcccttccatctgttgagtcgttttttgctagtggaggaaatgaagaatta 38941130  T
Q  101 ttgaagtc 108  Q
    ||||||||    
T  38941131 ttgaagtc 38941138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 202 - 283
Target Start/End: Complemental strand, 38943254 - 38943173
Alignment:
Q  202 tcttaagacactttatatccatgattgtccacagtttgtttttccacataacatgaccaatctaacttccctttgtgaactg 283  Q
    |||| |||||||| | |||||| ||||||||| ||| ||||||||||||||||||| || |||||||||||||||| |||||    
T  38943254 tcttgagacacttaaaatccatcattgtccactgttcgtttttccacataacatgagcagtctaacttccctttgtcaactg 38943173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 228 - 415
Target Start/End: Original strand, 7055369 - 7055556
Alignment:
Q  228 gtccacagtttgtttttccacataacatgaccaatctaacttccctttgtgaactgattgtctccagaggtgatgaaaaaatactagaaagcttagaaga 327  Q
    |||||||||| |||||||| |||||||||| || ||||||||||||| || || || | || |   |  || ||||||| |||||||| | | ||||||     
T  7055369 gtccacagttcgtttttccgcataacatgaacagtctaacttcccttcgtcaattggtagtttgggggtgtaatgaaaacatactagacaacatagaagg 7055468  T
Q  328 catcccctcactgcaatctttgtatctgaacgaattcctttctctaacatcctttccggactgtttgggtgcaatgacttctcttcaa 415  Q
     |||||||||||| ||   |||| |||| || | || | ||| ||||||||||| |||||||| |||||||| |||||||||||||||    
T  7055469 tatcccctcactgaaaaggttgtctctggacaattttccttccctaacatccttgccggactggttgggtgccatgacttctcttcaa 7055556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 38943070 - 38943019
Alignment:
Q  375 catcctttccggactgtttgggtgcaatgacttctcttcaaaatttacaaat 426  Q
    ||||||| |||||||| |||||||| ||||||||||||||||  ||||||||    
T  38943070 catccttgccggactggttgggtgccatgacttctcttcaaagattacaaat 38943019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 6963 - 6856
Alignment:
Q  1 acaacttttagagtttgatataagaaatgtccccaaacttacattgccaccccttccatctgttaaatcactttctgctaaaggaggaaatgaagagtta 100  Q
    |||||||||| | || ||||||| |||||||||||||||||||||| || |||||| ||||||| | |||||||||||||  |||||||||||||| |||    
T  6963 acaacttttaaatttagatataacaaatgtccccaaacttacattgacatcccttctatctgttgagtcactttctgctagtggaggaaatgaagaatta 6864  T
Q  101 ttgaagtc 108  Q
    ||||||||    
T  6863 ttgaagtc 6856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 202 - 274
Target Start/End: Complemental strand, 16165 - 16093
Alignment:
Q  202 tcttaagacactttatatccatgattgtccacagtttgtttttccacataacatgaccaatctaacttccctt 274  Q
    |||| |||||||| |||||  | | ||||||||||||||||||||||||||||||| || |||||||||||||    
T  16165 tcttgagacacttcatatcagttactgtccacagtttgtttttccacataacatgaacagtctaacttccctt 16093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 273
Target Start/End: Complemental strand, 6594 - 6523
Alignment:
Q  202 tcttaagacactttatatccatgattgtccacagtttgtttttccacataacatgaccaatctaacttccct 273  Q
    |||| |||||||| ||||| || ||||||||||||| ||||||||||||||||||| || |||| |||||||    
T  6594 tcttgagacacttcatatctattattgtccacagttagtttttccacataacatgaacagtctagcttccct 6523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 237 - 415
Target Start/End: Complemental strand, 10919 - 10741
Alignment:
Q  237 ttgtttttccacataacatgaccaatctaacttccctttgtgaactgattgtctccagaggtgatgaaaaaatactagaaagcttagaagacatcccctc 336  Q
    ||||||||||||||||||||| || ||||||||||||  ||||||||    ||||     || ||||||| ||||||||  || |||||| |||||||||    
T  10919 ttgtttttccacataacatgaacagtctaacttccctccgtgaactgcgactctcggattgtaatgaaaacatactagatggcatagaaggcatcccctc 10820  T
Q  337 actgcaatctttgtatctgaacgaattcctttctctaacatcctttccggactgtttgggtgcaatgacttctcttcaa 415  Q
    |||| ||   |||| ||||   || || | ||| | ||||||||| || |||||||||||||| |||||||||||||||    
T  10819 actgaaaagattgtgtctgtttgattttcattcacgaacatccttgccagactgtttgggtgccatgacttctcttcaa 10741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 122
Target Start/End: Complemental strand, 11312 - 11217
Alignment:
Q  27 atgtccccaaacttacattgccaccccttccatctgttaaatcactttctgctaaaggaggaaatgaagagttattgaagtccattgttaacaaca 122  Q
    ||||||| |||||| ||||||   ||||||||||| |  | ||||||| |||||   ||||||||||||| ||||||||||||||| || ||||||    
T  11312 atgtccctaaacttgcattgcagtcccttccatctatggagtcactttatgctagtcgaggaaatgaagaattattgaagtccattttttacaaca 11217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 415
Target Start/End: Complemental strand, 15993 - 15952
Alignment:
Q  374 acatcctttccggactgtttgggtgcaatgacttctcttcaa 415  Q
    |||||||| || |||||||||||||| |||||||||||||||    
T  15993 acatccttgccagactgtttgggtgccatgacttctcttcaa 15952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 7643 - 7522
Alignment:
Q  1 acaacttttagagtttgatataagaaatgtccccaaacttacattgccaccccttccatctgttaaatcactttctgctaaaggaggaaatgaagagtta 100  Q
    |||||||||  |||| ||||||| | ||||||| |||||| ||||||   |||||||||||||  | |||||||||| ||  |||||||||||||| |||    
T  7643 acaacttttgaagttagatataacagatgtccctaaacttgcattgcagtcccttccatctgtggagtcactttctgttagtggaggaaatgaagaatta 7544  T
Q  101 ttgaagtccattgttaacaaca 122  Q
    ||||||||| || || ||||||    
T  7543 ttgaagtcctttttttacaaca 7522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 415
Target Start/End: Complemental strand, 7087 - 7040
Alignment:
Q  368 tctctaacatcctttccggactgtttgggtgcaatgacttctcttcaa 415  Q
    ||||||| |||||| ||||||||||||||||| |||||||| ||||||    
T  7087 tctctaaaatccttgccggactgtttgggtgccatgacttcacttcaa 7040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 28 - 122
Target Start/End: Complemental strand, 13376548 - 13376454
Alignment:
Q  28 tgtccccaaacttacattgccaccccttccatctgttaaatcactttctgctaaaggaggaaatgaagagttattgaagtccattgttaacaaca 122  Q
    |||||| |||||| ||||| |  |||||||||||||| | |  |||| || ||  |||||||||||||||||||||||||||||| |||||||||    
T  13376548 tgtcccaaaacttgcattgtcgtcccttccatctgttgagttcctttttgttaccggaggaaatgaagagttattgaagtccatttttaacaaca 13376454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 416
Target Start/End: Complemental strand, 13376011 - 13375962
Alignment:
Q  367 ttctctaacatcctttccggactgtttgggtgcaatgacttctcttcaaa 416  Q
    ||||||||||||||| || ||||| |||||||| |||||| |||||||||    
T  13376011 ttctctaacatccttgccagactggttgggtgccatgactactcttcaaa 13375962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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