View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12251_high_12 (Length: 227)

Name: NF12251_high_12
Description: NF12251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12251_high_12
NF12251_high_12
[»] chr8 (1 HSPs)
chr8 (19-211)||(33224033-33224226)
[»] chr3 (1 HSPs)
chr3 (33-189)||(8450679-8450833)
[»] chr5 (2 HSPs)
chr5 (26-127)||(13309641-13309743)
chr5 (90-206)||(13311349-13311465)
[»] chr4 (2 HSPs)
chr4 (32-197)||(23920560-23920725)
chr4 (32-72)||(23908526-23908566)
[»] chr2 (2 HSPs)
chr2 (45-211)||(44680551-44680719)
chr2 (105-189)||(1986394-1986478)
[»] chr7 (2 HSPs)
chr7 (90-190)||(3368607-3368707)
chr7 (19-70)||(31892993-31893045)


Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 33224226 - 33224033
Alignment:
Q  19 gatacaacacttcacacatgaaaagtaacctttcaccaagagttacaatcatatgaaataaggatttttaatcaagagatgtgttggttcactttcagtt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  33224226 gatacaacacttcacacatgaaaagtaacctttcaccaagagttacaatcatatgaaataaggatttttaattaagagatgtgttggttcactttgagtt 33224127  T
Q  119 aagtaataacaatgaaacaaaacatcctaatcaaatctatgaaggg-atacaactattggaacacaaaaacatgagaaaatcgcacaaatcaca 211  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||  |||||| ||||||||||||||||||||||||||||||||||    
T  33224126 aagtaataacaatgaaacaaaacatcataatcaaatctatgaagggaatactgctattgcaacacaaaaacatgagaaaatcgcacaaatcaca 33224033  T

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Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 33 - 189
Target Start/End: Original strand, 8450679 - 8450833
Alignment:
Q  33 cacatgaaaagtaacctttcaccaagagttacaatcatatgaaataaggatttttaatcaagagatgtgttggttcactttcagttaagtaataacaatg 132  Q
    |||||||||||||||||||||| |||  ||||||||||||| ||| || ||||| ||||||||||||||| |||||||||  |||||| |||||||||||    
T  8450679 cacatgaaaagtaacctttcacaaag--ttacaatcatatgcaatcagaattttgaatcaagagatgtgtaggttcacttcaagttaaataataacaatg 8450776  T
Q  133 aaacaaaacatcctaatcaaatctatgaagggatacaactattggaacacaaaaaca 189  Q
    ||| || ||||| ||||| |||||||||||||||||||| |||| ||  ||||||||    
T  8450777 aaataatacatcataatctaatctatgaagggatacaaccattgaaaaccaaaaaca 8450833  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 13309743 - 13309641
Alignment:
Q  26 cacttcacacatgaaaagtaacctttcaccaagagttacaatcatatgaaat-aaggatttttaatcaagagatgtgttggttcactttcagttaagtaa 124  Q
    |||||||| ||||||||||||||||||||| ||||||||  |||| |||||| ||   ||||||  | |||||| |||| ||||||||||||||||||||    
T  13309743 cacttcacccatgaaaagtaacctttcacctagagttactgtcatttgaaatcaaatttttttatactagagatttgtttgttcactttcagttaagtaa 13309644  T
Q  125 taa 127  Q
    |||    
T  13309643 taa 13309641  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 206
Target Start/End: Complemental strand, 13311465 - 13311349
Alignment:
Q  90 tcaagagatgtgttggttcactttcagttaagtaataacaatgaaacaaaacatcctaatcaaatctatgaagggatacaactattggaacacaaaaaca 189  Q
    ||||||||| ||||  ||||||| | |||||||||||||||||||| || || || | |||||||||  |||||  |||||| ||| |||| ||||||||    
T  13311465 tcaagagatttgtttcttcacttccggttaagtaataacaatgaaataacacgtcttgatcaaatcttcgaaggtgtacaaccatttgaacccaaaaaca 13311366  T
Q  190 tgagaaaatcgcacaaa 206  Q
    | |||||| | ||||||    
T  13311365 ttagaaaaccacacaaa 13311349  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 32 - 197
Target Start/End: Original strand, 23920560 - 23920725
Alignment:
Q  32 acacatgaaaagtaacctttcaccaagagttacaatcatatgaaataaggatttttaatcaagagatgtgttggttcactttcagttaagtaataacaat 131  Q
    |||||||||||||||||||| |||||| || ||||||||||   || ||  |||| || |||||| || ||| ||||||||||||  || |||| |  ||    
T  23920560 acacatgaaaagtaacctttaaccaagggtaacaatcatatatgatcagatttttgaaacaagagttgcgtttgttcactttcagacaaataatgatcat 23920659  T
Q  132 gaaacaaaacatcctaatcaaatctatgaagggatacaactattggaacacaaaaacatgagaaaa 197  Q
    ||| ||| ||||| |||| |||| ||||||| |||||||  ||||| || |||| |||||||||||    
T  23920660 gaagcaacacatcttaattaaatatatgaagagatacaatcattgggactcaaagacatgagaaaa 23920725  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 23908566 - 23908526
Alignment:
Q  32 acacatgaaaagtaacctttcaccaagagttacaatcatat 72  Q
    |||||||||||||||||||| |||||| || ||||||||||    
T  23908566 acacatgaaaagtaacctttaaccaagggtaacaatcatat 23908526  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 211
Target Start/End: Complemental strand, 44680719 - 44680551
Alignment:
Q  45 aacctttcaccaagagttacaatcatatgaaataagga-tttttaatcaagagatgtgttggttcactttcagttaagtaataacaatgaaacaaaacat 143  Q
    |||||||||| ||||||| ||||||| ||| || || | |||||| ||||||||||| ||  |||||||||||||| ||  |||||||||||||| ||||    
T  44680719 aacctttcacgaagagttgcaatcatttgagattagaactttttattcaagagatgtattaattcactttcagttatgt-gtaacaatgaaacaatacat 44680621  T
Q  144 cctaa--tcaaatctatgaagggatacaactattggaacacaaaaacatgagaaaatcgcacaaatcaca 211  Q
       ||  |||||||||| ||| | ||| || |||||||| | ||||||||||||||  ||||||| ||||    
T  44680620 ttcaatctcaaatctataaagagttacgaccattggaaccctaaaacatgagaaaaatgcacaaaacaca 44680551  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 189
Target Start/End: Complemental strand, 1986478 - 1986394
Alignment:
Q  105 gttcactttcagttaagtaataacaatgaaacaaaacatcctaatcaaatctatgaagggatacaactattggaacacaaaaaca 189  Q
    ||||||||  ||||| |||||||||||||||||| ||||   |||||||| || ||||   ||| ||||||||||| ||||||||    
T  1986478 gttcacttatagttatgtaataacaatgaaacaatacattacaatcaaatttacgaagaattactactattggaacccaaaaaca 1986394  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 190
Target Start/End: Original strand, 3368607 - 3368707
Alignment:
Q  90 tcaagagatgtgttggttcactttcagttaagtaataacaatgaaacaaaacatcctaatcaaatctatgaagggatacaactattggaacacaaaaaca 189  Q
    |||||| |||| ||||||||||| |||||  |||||||||||||||||| ||||   |||||| | ||||||| | |||||| |||||||  ||||||||    
T  3368607 tcaagaaatgtattggttcacttacagttttgtaataacaatgaaacaatacatttcaatcaagtttatgaagagttacaaccattggaatccaaaaaca 3368706  T
Q  190 t 190  Q
    |    
T  3368707 t 3368707  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 31892993 - 31893045
Alignment:
Q  19 gatacaacacttcacacatga-aaagtaacctttcaccaagagttacaatcat 70  Q
    |||||| ||||||| | |||| |||| ||||||||||||||||||||||||||    
T  31892993 gatacaccacttcaaatatgagaaagcaacctttcaccaagagttacaatcat 31893045  T

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