View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12251_high_5 (Length: 419)
Name: NF12251_high_5
Description: NF12251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12251_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 149 - 345
Target Start/End: Complemental strand, 36865188 - 36864992
Alignment:
| Q |
149 |
ttctcaagagtcaagactcttgtaattccaaggtagttgagcatttggaaaaactaaaggtcttgtttagtcacaactttgagataatttattctgacgt |
248 |
Q |
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| T |
36865188 |
ttctcaagagtcaagactcttgtaattccaaggtagtagagcatttggaaaaactaaaggtcttgtttagtcacaactttgagataatttattctgacgt |
36865089 |
T |
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| Q |
249 |
tgccatctacaacgaacttctccaagtggttaaagatcttcaggacttcaaaatgtacttgagtggtgtcaacctaggtattttcactgcagtacag |
345 |
Q |
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| T |
36865088 |
tgccatctacaacgaacttctccaagtggttaaagatcttcaggacttcaaaatgtacttgagtggtgtcaacctaggtattttcactgcagtacag |
36864992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 36865364 - 36865221
Alignment:
| Q |
11 |
caaaggatgccacgtatatccaacctattttggagattactgctgatgaacgtctcaatgttgatg----catctcaagagagaaccatagagaaacatt |
106 |
Q |
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| T |
36865364 |
caaaggatgccacgtatatccaacctattttggagattactgctgatgaacgtctcaatgttgatatatacatctcaagagagaaccatagagaaacatt |
36865265 |
T |
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| Q |
107 |
tggatttttctcccaaaggagatcaaattacaaattatgatatt |
150 |
Q |
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| T |
36865264 |
tggatttttctcccaaaggagatcaaattacaaattatgatatt |
36865221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 379
Target Start/End: Complemental strand, 36864976 - 36864948
Alignment:
| Q |
351 |
cttcgtattgacatcccttttatcaccaa |
379 |
Q |
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| T |
36864976 |
cttcgtattgacatcccttttatcaccaa |
36864948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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