View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12251_high_7 (Length: 376)

Name: NF12251_high_7
Description: NF12251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12251_high_7
NF12251_high_7
[»] chr6 (8 HSPs)
chr6 (1-330)||(11168576-11168908)
chr6 (1-330)||(11207320-11207648)
chr6 (237-316)||(2627704-2627783)
chr6 (237-316)||(22978377-22978456)
chr6 (237-316)||(23809947-23810026)
chr6 (257-322)||(8746751-8746816)
chr6 (236-311)||(34218722-34218797)
chr6 (270-323)||(1363154-1363207)
[»] chr1 (2 HSPs)
chr1 (4-330)||(13623982-13624303)
chr1 (119-330)||(52037441-52037652)
[»] chr5 (3 HSPs)
chr5 (119-323)||(1685106-1685311)
chr5 (119-218)||(39954566-39954665)
chr5 (84-117)||(4805609-4805642)
[»] scaffold0249 (1 HSPs)
scaffold0249 (1-117)||(19466-19582)
[»] chr7 (7 HSPs)
chr7 (1-117)||(21889744-21889860)
chr7 (119-218)||(37477961-37478060)
chr7 (260-330)||(25731051-25731121)
chr7 (266-323)||(33097893-33097950)
chr7 (270-323)||(21895079-21895132)
chr7 (267-308)||(25350167-25350208)
chr7 (267-308)||(25355861-25355902)
[»] chr3 (4 HSPs)
chr3 (1-117)||(41050534-41050650)
chr3 (119-311)||(41053588-41053776)
chr3 (255-311)||(42614306-42614362)
chr3 (270-311)||(9878399-9878440)
[»] chr4 (6 HSPs)
chr4 (6-115)||(1974938-1975047)
chr4 (18-97)||(56540516-56540595)
chr4 (236-330)||(1694788-1694882)
chr4 (236-311)||(5482931-5483006)
chr4 (266-320)||(1967484-1967538)
chr4 (247-323)||(36678788-36678862)
[»] chr2 (4 HSPs)
chr2 (119-311)||(44800441-44800627)
chr2 (236-311)||(45003731-45003806)
chr2 (260-311)||(25123500-25123551)
chr2 (270-323)||(15084357-15084410)
[»] chr8 (3 HSPs)
chr8 (236-311)||(2680305-2680380)
chr8 (257-322)||(24847957-24848022)
chr8 (259-322)||(28940772-28940835)


Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 11168576 - 11168908
Alignment:
Q  1 agctcaagttatttagtatgatcatgatgatgttaattaacaaatatgaggatttgtattattcagtctatgtatatttgtttagattacataatatgtg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11168576 agctcaagttatttagtatgatcatgatgatgttaattaacaaatatgaggatttgtattattcagtctatgtatatttgtttagattacataatatgtg 11168675  T
Q  101 cactatttggctgtgtttcttatttaatgcggtaacattttgggattggcttagtacacttggattttatcttaagaaatcagtttcatttgacttattt 200  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  11168676 cactatttggctgtgtttcttatctagtgcggtaacattttgggattggcttaggacacttggattttatcttaagaaatcagtttcatttgacttattc 11168775  T
Q  201 aaacatgtagtaaggatt---nnnnnnnnnnnnnnnngtattcaacccgtgcgaaggacgcgaccttcgttctcaaaattacgaagaataagaatgttcc 297  Q
    ||||||||||||||||||                   ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  11168776 aaacatgtagtaaggattaaaaataaaaataaaaacagtattcaacccgtgcgaagaacgcgaccttcgttctcaaaattacgaagaataagaatgttcc 11168875  T
Q  298 gtaatttgaacatccctcttttagagaaatttt 330  Q
    |||||||||||||||||||||||||||||||||    
T  11168876 gtaatttgaacatccctcttttagagaaatttt 11168908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 11207320 - 11207648
Alignment:
Q  1 agctcaagttatttagtatgatcatgatgatgttaattaacaaatatgaggatttgtattattcagtctatgtatatttgtttagattacataatatgtg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11207320 agctcaagttatttagtatgatcatgatgatgttaattaacaaatatgaggatttgtattattcagtctatgtatatttgtttagattacataatatgtg 11207419  T
Q  101 cactatttggctgtgtttcttatttaatgcggtaacattttgggattggcttagtacacttggattttatcttaagaaatcagtttcatttgacttattt 200  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||     
T  11207420 cactatttggctgtgttttttatttagtgcggtaacattttgggattggcttagtacacttggagtttatcttaagaaatcagtttcatttaacttattc 11207519  T
Q  201 aaacatgtagtaaggattnnnnnnnnnnnnnnnngtattcaacccgtgcgaaggacgcgaccttcgttctcaaaattacgaagaataagaatgttccgta 300  Q
    |||||| |||||||||||                ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11207520 aaacatatagtaaggatt-aaaaaagaaaaaacagtattcaattcgtgcgaaggacgcgaccttcgttctcaaaattacgaagaataagaatgttccgta 11207618  T
Q  301 atttgaacatccctcttttagagaaatttt 330  Q
    ||||||||||||||||||||||||||||||    
T  11207619 atttgaacatccctcttttagagaaatttt 11207648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 237 - 316
Target Start/End: Complemental strand, 2627783 - 2627704
Alignment:
Q  237 attcaacccgtgcgaaggacgcgaccttcgttctcaaaattacgaagaataagaatgttccgtaatttgaacatccctct 316  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||  ||||||  |||||||||||||| ||||    
T  2627783 attcaacccgtgcgaagcacgcgaccttcgttctcaaatttacgaagaatagcaatgttatgtaatttgaacatctctct 2627704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 237 - 316
Target Start/End: Complemental strand, 22978456 - 22978377
Alignment:
Q  237 attcaacccgtgcgaaggacgcgaccttcgttctcaaaattacgaagaataagaatgttccgtaatttgaacatccctct 316  Q
    ||||||||||||||||| || ||||||||||||||||| |||||||||| || ||||||  |||||||||||||| ||||    
T  22978456 attcaacccgtgcgaagcacacgaccttcgttctcaaatttacgaagaacaacaatgttatgtaatttgaacatctctct 22978377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 237 - 316
Target Start/End: Original strand, 23809947 - 23810026
Alignment:
Q  237 attcaacccgtgcgaaggacgcgaccttcgttctcaaaattacgaagaataagaatgttccgtaatttgaacatccctct 316  Q
    ||||||||||||||||| || ||||||||||||||||| |||||||||| || ||||||  |||||||||||||| ||||    
T  23809947 attcaacccgtgcgaagcacacgaccttcgttctcaaatttacgaagaacaacaatgttatgtaatttgaacatctctct 23810026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 257 - 322
Target Start/End: Complemental strand, 8746816 - 8746751
Alignment:
Q  257 gcgaccttcgttctcaaaattacgaagaataagaatgttccgtaatttgaacatccctcttttaga 322  Q
    |||||||| ||||||||| ||||||||||| | |||||||| ||||||||||||||||| ||||||    
T  8746816 gcgacctttgttctcaaatttacgaagaatgacaatgttccataatttgaacatccctcctttaga 8746751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 311
Target Start/End: Original strand, 34218722 - 34218797
Alignment:
Q  236 tattcaacccgtgcgaaggacgcgaccttcgttctcaaaattacgaagaataagaatgttccgtaatttgaacatc 311  Q
    ||||||||| |||||||| | |||||||||||| || || ||| ||||||| | ||| ||||||||||||||||||    
T  34218722 tattcaacctgtgcgaagcatgcgaccttcgttttcgaatttatgaagaattacaatattccgtaatttgaacatc 34218797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 323
Target Start/End: Original strand, 1363154 - 1363207
Alignment:
Q  270 tcaaaattacgaagaataagaatgttccgtaatttgaacatccctcttttagag 323  Q
    ||||| ||||||||||||| |||||||||||||||||||||  ||| |||||||    
T  1363154 tcaaatttacgaagaataacaatgttccgtaatttgaacatatctcctttagag 1363207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 4 - 330
Target Start/End: Original strand, 13623982 - 13624303
Alignment:
Q  4 tcaagttatttagtatgatcatgatgatgttaattaacaaatatgaggatttgtattattcagtctatgtatatttgtttagattacataatatgtgcac 103  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13623982 tcaagttattgagtatgatcatgatgatgttaattaacaaatatgagcatttgtattattcagtctatgtatatttgtttagattacataatatttgcac 13624081  T
Q  104 tatttggctgtgtttcttatttaatgcggtaacattttgggattggcttagtacacttggattttatcttaagaaatcagtttcatttgacttatttaaa 203  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||    
T  13624082 tatttggctgtgttccttatttagtgcggtaacattttgggattggcttagtacacttggattttatcttaggaaatcagtttcatttgacttattcaaa 13624181  T
Q  204 catgtagtaaggattnnnnnnnnnnnnnnnngtattcaacccgtgcgaaggacgcgaccttcgttctcaaaattacgaagaataagaatgttccgtaatt 303  Q
    ||| |||||||||||                ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13624182 catatagtaaggatt-----taaaaaaaacagtattcaacccgtgcgaaggacgcgaccttcgttctcaaaattacgaagaataggaatgttccgtaatt 13624276  T
Q  304 tgaacatccctcttttagagaaatttt 330  Q
    |||||||| ||| ||||||||||||||    
T  13624277 tgaacatctctcctttagagaaatttt 13624303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 119 - 330
Target Start/End: Complemental strand, 52037652 - 52037441
Alignment:
Q  119 cttatttaatgcggtaacattttgggattggcttagtacacttggattttatcttaagaaatcagtttcatttgacttatttaaacatgtagtaaggatt 218  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||    
T  52037652 cttatttagtgccgtaacattttgggattggcttagtacacttggattttatcttaggaaatcagtttcatttgacttattcaaacatatagtaaggatt 52037553  T
Q  219 nnnnnnnnnnnnnnnngtattcaacccgtgcgaaggacgcgaccttcgttctcaaaattacgaagaataagaatgttccgtaatttgaacatccctcttt 318  Q
                    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||| ||    
T  52037552 tttaaaaaaaaaaacagtattcaacccgtgcgaaggacgcgaccttcgttctcaaaattacgaagaatagcaatgttccgtaatttgaacatctctcctt 52037453  T
Q  319 tagagaaatttt 330  Q
    ||||| ||||||    
T  52037452 tagaggaatttt 52037441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 119 - 323
Target Start/End: Complemental strand, 1685311 - 1685106
Alignment:
Q  119 cttatttaatgcggtaacattttgggattggcttagtacacttggattttatcttaagaaatcagtttcatttgacttatttaaacatgtagtaagga-t 217  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||| |    
T  1685311 cttatttagtgccgtaacattttgggattggcttagtacacttggattttatcttaggaaatcagtttcatttgacttattcaaacatatagtaaggatt 1685212  T
Q  218 tnnnnnnnnnnnnnnnngtattcaacccgtgcgaaggacgcgaccttcgttctcaaaattacgaagaataagaatgttccgtaatttgaacatccctctt 317  Q
    |                |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||| |    
T  1685211 tttttaaaaaaaaaacagtattcaacccgtgcgaaggacgcgaccttcgttctcaaaattacgaagaatagcaatgttccgtaatttgaacatctctcct 1685112  T
Q  318 ttagag 323  Q
    ||||||    
T  1685111 ttagag 1685106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 218
Target Start/End: Original strand, 39954566 - 39954665
Alignment:
Q  119 cttatttaatgcggtaacattttgggattggcttagtacacttggattttatcttaagaaatcagtttcatttgacttatttaaacatgtagtaaggatt 218  Q
    |||||||| ||| |||||||||| |||||| |||||||||||| |||||||| ||   ||||  |||||||||| |||||| ||||||||| ||| ||||    
T  39954566 cttatttagtgctgtaacattttaggattgacttagtacacttagattttatattggtaaattggtttcatttgtcttattcaaacatgtattaatgatt 39954665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 117
Target Start/End: Complemental strand, 4805642 - 4805609
Alignment:
Q  84 agattacataatatgtgcactatttggctgtgtt 117  Q
    |||||||||||||| |||||||||||||||||||    
T  4805642 agattacataatatttgcactatttggctgtgtt 4805609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 109; Significance: 9e-55; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 19466 - 19582
Alignment:
Q  1 agctcaagttatttagtatgatcatgatgatgttaattaacaaatatgaggatttgtattattcagtctatgtatatttgtttagattacataatatgtg 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  19466 agctcaagttattgagtatgatcatgatgatgttaattaacaaatatgaggatttgtattattcagtctatgtatatttgtttagattacataatatttg 19565  T
Q  101 cactatttggctgtgtt 117  Q
    |||||||||||||||||    
T  19566 cactatttggctgtgtt 19582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 9e-55; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 21889860 - 21889744
Alignment:
Q  1 agctcaagttatttagtatgatcatgatgatgttaattaacaaatatgaggatttgtattattcagtctatgtatatttgtttagattacataatatgtg 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  21889860 agctcaagttattgagtatgatcatgatgatgttaattaacaaatatgaggatttgtattattcagtctatgtatatttgtttagattacataatatttg 21889761  T
Q  101 cactatttggctgtgtt 117  Q
    |||||||||||||||||    
T  21889760 cactatttggctgtgtt 21889744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 119 - 218
Target Start/End: Complemental strand, 37478060 - 37477961
Alignment:
Q  119 cttatttaatgcggtaacattttgggattggcttagtacacttggattttatcttaagaaatcagtttcatttgacttatttaaacatgtagtaaggatt 218  Q
    |||||||| ||| ||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||    
T  37478060 cttatttactgcagtaacattttgggattgacttagtacatttggattttatcttaggaaatcagtttcatttgacttattcaaacatatagtaaggatt 37477961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 330
Target Start/End: Original strand, 25731051 - 25731121
Alignment:
Q  260 accttcgttctcaaaattacgaagaataagaatgttccgtaatttgaacatccctcttttagagaaatttt 330  Q
    ||||||||||||||| ||||||||| | | |||||  ||||||||||||||| ||| ||||||| ||||||    
T  25731051 accttcgttctcaaatttacgaagactgacaatgtcgcgtaatttgaacatctctcctttagagcaatttt 25731121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 33097950 - 33097893
Alignment:
Q  266 gttctcaaaattacgaagaataagaatgttccgtaatttgaacatccctcttttagag 323  Q
    ||||| ||| ||||||||||| | |||||||||||||||||||||| ||| |||||||    
T  33097950 gttcttaaatttacgaagaatgacaatgttccgtaatttgaacatctctcctttagag 33097893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 323
Target Start/End: Original strand, 21895079 - 21895132
Alignment:
Q  270 tcaaaattacgaagaataagaatgttccgtaatttgaacatccctcttttagag 323  Q
    ||||| ||||||||||||  |||||||||||||||||||||  ||| |||||||    
T  21895079 tcaaatttacgaagaatagtaatgttccgtaatttgaacatatctcctttagag 21895132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 308
Target Start/End: Complemental strand, 25350208 - 25350167
Alignment:
Q  267 ttctcaaaattacgaagaataagaatgttccgtaatttgaac 308  Q
    |||||||| ||||||||||| | |||||||||||||||||||    
T  25350208 ttctcaaatttacgaagaatgacaatgttccgtaatttgaac 25350167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 308
Target Start/End: Complemental strand, 25355902 - 25355861
Alignment:
Q  267 ttctcaaaattacgaagaataagaatgttccgtaatttgaac 308  Q
    |||||||| ||||||||||| | |||||||||||||||||||    
T  25355902 ttctcaaatttacgaagaatgacaatgttccgtaatttgaac 25355861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 9e-55; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 41050534 - 41050650
Alignment:
Q  1 agctcaagttatttagtatgatcatgatgatgttaattaacaaatatgaggatttgtattattcagtctatgtatatttgtttagattacataatatgtg 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  41050534 agctcaagttattgagtatgatcatgatgatgttaattaacaaatatgaggatttgtattattcagtctatgtatatttgtttagattacataatatttg 41050633  T
Q  101 cactatttggctgtgtt 117  Q
    |||||||||||||||||    
T  41050634 cactatttggctgtgtt 41050650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 119 - 311
Target Start/End: Original strand, 41053588 - 41053776
Alignment:
Q  119 cttatttaatgcggtaacattttgggattggcttagtacacttggattttatcttaagaaatcagtttcatttgacttatttaaacatgtagtaaggatt 218  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||| | |||| |||||||||||    
T  41053588 cttatttagtgcggtaacattttgggattggcttagtacacttggattttatcttaggaaatcggtttcatttgtcttattcagacatatagtaaggatt 41053687  T
Q  219 nnnnnnnnnnnnnnnngtattcaacccgtgcgaaggacgcgaccttcgttctcaaaattacgaagaataagaatgttccgtaatttgaacatc 311  Q
                    |||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||    
T  41053688 ----tccaaaaaaacagtattcaacccgtgcgaaggacgcgaccttcgttcttaaaattacaaagaataacaatgttccgtaatttgaacatc 41053776  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 42614362 - 42614306
Alignment:
Q  255 acgcgaccttcgttctcaaaattacgaagaataagaatgttccgtaatttgaacatc 311  Q
    |||||||||||||||||||| || |||||||||| |||||| |||||||||||||||    
T  42614362 acgcgaccttcgttctcaaattttcgaagaataacaatgtttcgtaatttgaacatc 42614306  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 311
Target Start/End: Complemental strand, 9878440 - 9878399
Alignment:
Q  270 tcaaaattacgaagaataagaatgttccgtaatttgaacatc 311  Q
    ||||| ||||||||||||| ||||||||| ||||||||||||    
T  9878440 tcaaatttacgaagaataacaatgttccgaaatttgaacatc 9878399  T

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Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 6 - 115
Target Start/End: Original strand, 1974938 - 1975047
Alignment:
Q  6 aagttatttagtatgatcatgatgatgttaattaacaaatatgaggatttgtattattcagtctatgtatatttgtttagattacataatatgtgcacta 105  Q
    |||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  1974938 aagttattgagcatgatcatgatgatattaattaacaaatatgaggatttgtattattcagtctatgtatatttgtttagattgcataatatttgcacta 1975037  T
Q  106 tttggctgtg 115  Q
    ||||||||||    
T  1975038 tttggctgtg 1975047  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 56540516 - 56540595
Alignment:
Q  18 atgatcatgatgatgttaattaacaaatatgaggatttgtattattcagtctatgtatatttgtttagattacataatat 97  Q
    |||||||||||||| ||||||||||||||| |||||||| ||| |||| | | ||||||||||||||||||| |||||||    
T  56540516 atgatcatgatgatattaattaacaaatatcaggatttgcattgttcattatgtgtatatttgtttagattaaataatat 56540595  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 236 - 330
Target Start/End: Original strand, 1694788 - 1694882
Alignment:
Q  236 tattcaacccgtgcgaaggacgcgaccttcgttctcaaaattacgaagaataagaatgttccgtaatttgaacatccctcttttagagaaatttt 330  Q
    ||||||||| ||| |||| | | |||||||||||||||| ||||||||||||  |||||||||| ||||||||||  ||| ||||||| ||||||    
T  1694788 tattcaaccagtgtgaagcatgggaccttcgttctcaaatttacgaagaatagcaatgttccgtgatttgaacatatctcctttagagcaatttt 1694882  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 311
Target Start/End: Original strand, 5482931 - 5483006
Alignment:
Q  236 tattcaacccgtgcgaaggacgcgaccttcgttctcaaaattacgaagaataagaatgttccgtaatttgaacatc 311  Q
    |||||||||||||||||| | | |||||||||||||||| ||| ||||||  | ||| ||||||||||||||||||    
T  5482931 tattcaacccgtgcgaagcatgtgaccttcgttctcaaatttatgaagaacgacaatattccgtaatttgaacatc 5483006  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 320
Target Start/End: Complemental strand, 1967538 - 1967484
Alignment:
Q  266 gttctcaaaattacgaagaataagaatgttccgtaatttgaacatccctctttta 320  Q
    |||||| || ||||||||||| | |||||||||||||||||||||  ||||||||    
T  1967538 gttctctaatttacgaagaatgacaatgttccgtaatttgaacatttctctttta 1967484  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 323
Target Start/End: Complemental strand, 36678862 - 36678788
Alignment:
Q  247 tgcgaaggacgcgaccttcgttctcaaaattacgaagaataagaatgttccgtaatttgaacatccctcttttagag 323  Q
    ||||||| || ||||||||||||||||| ||||||| ||||  ||||||  ||||||| |||||  |||||||||||    
T  36678862 tgcgaagcacacgaccttcgttctcaaatttacgaaaaatagcaatgttttgtaatttaaacat--ctcttttagag 36678788  T

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Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 119 - 311
Target Start/End: Original strand, 44800441 - 44800627
Alignment:
Q  119 cttatttaatgcggtaacattttgggattggcttagtacacttggattttatcttaagaaatcagtttcatttgacttatttaaacatgtagtaaggatt 218  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||||||||||  ||||| |||||||||| |||||| |||||  |||||||||||    
T  44800441 cttatttagtgcggtaacattttggaattgacttagtacacttggattttatcttagtaaatcggtttcatttgtcttattcaaacagatagtaaggatt 44800540  T
Q  219 nnnnnnnnnnnnnnnngtattcaacccgtgcgaaggacgcgaccttcgttctcaaaattacgaagaataagaatgttccgtaatttgaacatc 311  Q
                    ||| |||| ||||||||||||||| ||||||||||||||| ||||||||||||  |||||| |||||||||||||||    
T  44800541 ------taaaaaaacagtactcaatccgtgcgaaggacgcaaccttcgttctcaaatttacgaagaatagcaatgtttcgtaatttgaacatc 44800627  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 311
Target Start/End: Complemental strand, 45003806 - 45003731
Alignment:
Q  236 tattcaacccgtgcgaaggacgcgaccttcgttctcaaaattacgaagaataagaatgttccgtaatttgaacatc 311  Q
    |||||||||||||||||| | | |||||||||||||||| ||| ||||||  | ||| ||||||||||||||||||    
T  45003806 tattcaacccgtgcgaagcatgtgaccttcgttctcaaatttatgaagaacgacaatattccgtaatttgaacatc 45003731  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 311
Target Start/End: Complemental strand, 25123551 - 25123500
Alignment:
Q  260 accttcgttctcaaaattacgaagaataagaatgttccgtaatttgaacatc 311  Q
    ||||||||||||||  ||||||||||| | ||||||||||||||||||||||    
T  25123551 accttcgttctcaagtttacgaagaatgacaatgttccgtaatttgaacatc 25123500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 323
Target Start/End: Complemental strand, 15084410 - 15084357
Alignment:
Q  270 tcaaaattacgaagaataagaatgttccgtaatttgaacatccctcttttagag 323  Q
    ||||| ||||||||||||  |||||||||||||||||||||  ||| |||||||    
T  15084410 tcaaatttacgaagaatagcaatgttccgtaatttgaacatatctcctttagag 15084357  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 311
Target Start/End: Complemental strand, 2680380 - 2680305
Alignment:
Q  236 tattcaacccgtgcgaaggacgcgaccttcgttctcaaaattacgaagaataagaatgttccgtaatttgaacatc 311  Q
    |||||||||||||||||| | | |||||||||||||||| ||| ||||||  | ||| ||||||||||||||||||    
T  2680380 tattcaacccgtgcgaagcatgtgaccttcgttctcaaatttatgaagaacgacaatattccgtaatttgaacatc 2680305  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 322
Target Start/End: Complemental strand, 24848022 - 24847957
Alignment:
Q  257 gcgaccttcgttctcaaaattacgaagaataagaatgttccgtaatttgaacatccctcttttaga 322  Q
    |||||||||||||||||| ||||||||||| | ||||||   ||||||||||||| ||| ||||||    
T  24848022 gcgaccttcgttctcaaatttacgaagaatgacaatgttttataatttgaacatctctcctttaga 24847957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 322
Target Start/End: Complemental strand, 28940835 - 28940772
Alignment:
Q  259 gaccttcgttctcaaaattacgaagaataagaatgttccgtaatttgaacatccctcttttaga 322  Q
    |||||| ||||||||  ||||||||||| | ||||||| |||||||||||||| ||| ||||||    
T  28940835 gacctttgttctcaagtttacgaagaatgacaatgttctgtaatttgaacatctctcctttaga 28940772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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