View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12251_low_1 (Length: 902)
Name: NF12251_low_1
Description: NF12251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12251_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 838; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 838; E-Value: 0
Query Start/End: Original strand, 14 - 895
Target Start/End: Original strand, 4750794 - 4751675
Alignment:
| Q |
14 |
caaagggaaagatgctttacataaacacgcaacttgtttggcagttttatcaaacgaggcattaacatgtgattctacatcctacccctacccttatcca |
113 |
Q |
| |
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||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4750794 |
caaagcgaaagatgctttacataaacatgcaacttgtttggcagttttatcaaatgaggcattaacatgtgattctacatcctacccctacccttaccca |
4750893 |
T |
|
| Q |
114 |
tttttataaacatctcaaagcggcctcccttccacccccaactctggtggattttaaacatccaaacaaagagaaagaaaccaaacctctcattatgttc |
213 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4750894 |
tttttataaacatctcaaagcggcctcccttccgcccccaactctggtggattttaaacatccaaacaaagagaaagaaaccaaacctctcattatgttc |
4750993 |
T |
|
| Q |
214 |
atttctcagttttcaaagatttcagagaatatgtccgtttctgatttacggtaaccataaaaaatgtttaacgatttcaaagaatgtatgttggcaatga |
313 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
4750994 |
atttctcagttttcaaagatttcagagaatatgtccgtttctgatttacggtaaccataaacaatatttaacgatttcaaagaatgtatgttggcaatga |
4751093 |
T |
|
| Q |
314 |
tttgacaaagccctgtcttcccattttctagatcttagtctttattttggatcaataatagggtacttatcgtgaccataaaagttaccaaatacaataa |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4751094 |
tttgacaaagccctgtcttcccattttctagatcttagtctttattttggatcaataattgggtacttatcgtgaccataaaagttaccaaatacaataa |
4751193 |
T |
|
| Q |
414 |
tgaacctaaatatatagacgtcacagacacaaattggtttaggcgtcacacaattctagaacacaaaattgaacaccattatttgaaaacatagtttgta |
513 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4751194 |
tgaacctaaatatatagacgtcacagacacaaattggtttaggcgtcacacaattctagaacacaaaattgaacaccattatttgaaaacatagtttgta |
4751293 |
T |
|
| Q |
514 |
tgctatcttagccaagttttctttagtgaagaattctttcactggcgagtgaggacttccactgctaagttttctatatctccattttctctcttgaagc |
613 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4751294 |
tgctatcttagccaagttttctttagtgaagaattctttcactggcgagtgaggacttccactgctaagttttctatatctccattttctctcttgaagc |
4751393 |
T |
|
| Q |
614 |
aaacaggagaaaacttcaatttcctcccagtttctcttgtatcaaacaatgtgttagtgaataaaataaacatgcaagtcttaattgtgctatggattct |
713 |
Q |
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| T |
4751394 |
aaacaggagaaaacttcaatttcctcccagtttctcttgtatcaaacaatgtgttagtgaataaaataaacatgcaagtcttaattgtgctatggattct |
4751493 |
T |
|
| Q |
714 |
aggcagcactaagcatcaaatggatccagaaagaaataagtatcactgtggtttgttctaacataatgtcttaaatttttatcatttccaagtaccacaa |
813 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
4751494 |
aggcagcactaagcatcaaatggatccagaaagaaataagtatcaccgtggtttgttctaacgtaatgtcttaaatttttatcatttccaagtaccacaa |
4751593 |
T |
|
| Q |
814 |
agcaccgcatttgatagcaatctcattcacactcagatatcagaggagaaaggcattggatcgtaagtgacacaggttctgc |
895 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4751594 |
agcaccgcatttgatagcaatctcattcacactcagatatcagaggagaaaggcattggatcgtaagtgacaaaggttctgc |
4751675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 4750588 - 4750795
Alignment:
| Q |
14 |
caaagggaaagatgctttacataaacacgcaacttgtttggcagttttatcaaacgaggcattaacatgtgattctacatcctacccctacccttatcca |
113 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4750588 |
caaagggaaagatgctttacataaacatgcaacttgtttggcagttttatcaaatgaggcattaacatgtgattctacatcctacccctacccttaccca |
4750687 |
T |
|
| Q |
114 |
tttttataaacatctcaaagcggcctcccttccacccccaactctggtggattttaaacatccaaacaaagagaaagaaaccaaacctctcattatgttc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4750688 |
tttttataaacatctcaaagcggcctcccttccgcccccaactttggtggattttaaacatccaaacaaagagaaagaaaccaaacctctcattatgttc |
4750787 |
T |
|
| Q |
214 |
atttctca |
221 |
Q |
| |
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|||||||| |
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|
| T |
4750788 |
atttctca |
4750795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 166; Significance: 2e-88; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 38 - 232
Target Start/End: Complemental strand, 51322911 - 51322713
Alignment:
| Q |
38 |
acacgcaacttgtttggcagttttatcaaacgaggcattaacatgtgattctacatcctacccctacccttatccatttttataaacatctcaaagcggc |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51322911 |
acacgcaacttgtttggcagttttatcaaatgtggcattaagatgtgattctacatcctacccctacccttatccatttttataaacatctcaaagcggc |
51322812 |
T |
|
| Q |
138 |
ctcccttccacccccaactctggtggattttaaacatccaaacaaagagaaagaaaccaaacctctc----attatgttcatttctcagttttcaaaga |
232 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
51322811 |
ctcccttccgcccccaactctggtggattttaaacatccaaacaaagagaaagaaaccaaacctctcattaattatgttcatttctcagttttcaaaga |
51322713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 288 - 403
Target Start/End: Complemental strand, 51322721 - 51322608
Alignment:
| Q |
288 |
tttcaaagaatgtatgttggcaatgatttgacaaagccctgtcttcccattttctagatcttagtctttattttggatcaataatagggtacttatcgtg |
387 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||| |
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| T |
51322721 |
tttcaaagaatgtatgtaggcaatgatttgacaaagccctgtcttcccattttctagatcttagtcttta--ttgaatcaataattgggtacttatcgtg |
51322624 |
T |
|
| Q |
388 |
accataaaagttacca |
403 |
Q |
| |
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| |||||||||||||| |
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|
| T |
51322623 |
atcataaaagttacca |
51322608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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