View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12251_low_15 (Length: 217)
Name: NF12251_low_15
Description: NF12251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12251_low_15 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 37634638 - 37634422
Alignment:
| Q |
1 |
caaactgtttatgactctcttgacgttcacgttggacaatgctacactgtcctcgtgaccgccgataaagagccaagggactattacatgattgcctcca |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37634638 |
caaaatgtttatgactctcttgacgttcacgttggacaatgctacactgtcctcgtgaccgccgataaagagccaagggactattacatgattgcctcca |
37634539 |
T |
|
| Q |
101 |
cccgtatgaccaagtacaatctacttggaaagggtattgttcgttacaccaacggaaaaggtcccgcttcacctgtgctaccacctgcacctaccggttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37634538 |
cccgtatgaccaagtacaatctacttggaaagggtattgttcgttacaccaacggaaaaggtcccgcttcacctgtgctaccacctgcacctgtcggttg |
37634439 |
T |
|
| Q |
201 |
ggcttggtctctcaacc |
217 |
Q |
| |
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||||||||||||||||| |
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| T |
37634438 |
ggcttggtctctcaacc |
37634422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 37637552 - 37637336
Alignment:
| Q |
1 |
caaactgtttatgactctcttgacgttcacgttggacaatgctacactgtcctcgtgaccgccgataaagagccaagggactattacatgattgcctcca |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37637552 |
caaaatgtttatgactctcttgacgttcacgttggacaatgctacactgtcctcgtgaccgccgataaagagccaagggactattacatgattgcctcca |
37637453 |
T |
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| Q |
101 |
cccgtatgaccaagtacaatctacttggaaagggtattgttcgttacaccaacggaaaaggtcccgcttcacctgtgctaccacctgcacctaccggttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37637452 |
cccgtatgaccaagtacaatctacttggaaagggtattgttcgttacaccaacggaaaaggtcccgcttcacctgtgctaccacctgcacctgtcggttg |
37637353 |
T |
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| Q |
201 |
ggcttggtctctcaacc |
217 |
Q |
| |
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||||||||||||||||| |
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| T |
37637352 |
ggcttggtctctcaacc |
37637336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 37640466 - 37640250
Alignment:
| Q |
1 |
caaactgtttatgactctcttgacgttcacgttggacaatgctacactgtcctcgtgaccgccgataaagagccaagggactattacatgattgcctcca |
100 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37640466 |
caaaatgtttatgactctcttgacgttcacgttggacaatgctacactgtcctcgtgaccgccgataaagagccaagggactattacatgattgcctcca |
37640367 |
T |
|
| Q |
101 |
cccgtatgaccaagtacaatctacttggaaagggtattgttcgttacaccaacggaaaaggtcccgcttcacctgtgctaccacctgcacctaccggttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37640366 |
cccgtatgaccaagtacaatctacttggaaagggtattatacgttacaccaacggaaaaggtcccgcttcacctgtgctaccacctgcacctgtcggttg |
37640267 |
T |
|
| Q |
201 |
ggcttggtctctcaacc |
217 |
Q |
| |
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||||||||||||||||| |
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| T |
37640266 |
ggcttggtctctcaacc |
37640250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 37648753 - 37648537
Alignment:
| Q |
1 |
caaactgtttatgactctcttgacgttcacgttggacaatgctacactgtcctcgtgaccgccgataaagagccaagggactattacatgattgcctcca |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37648753 |
caaaatgtttatgactctcttgacgttcacgttggacaatgctacactgtcctcgtgaccgccgataaagagccaagggactattacatgattgcctcca |
37648654 |
T |
|
| Q |
101 |
cccgtatgaccaagtacaatctacttggaaagggtattgttcgttacaccaacggaaaaggtcccgcttcacctgtgctaccacctgcacctaccggttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37648653 |
cccgtatgaccaagtacaatctacttggaaagggtattatacgttacaccaacggaaaaggtcccgcttcacctgtgctaccacctgcacctgtcggttg |
37648554 |
T |
|
| Q |
201 |
ggcttggtctctcaacc |
217 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
37648553 |
ggcttggtctctcaacc |
37648537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 37645840 - 37645624
Alignment:
| Q |
1 |
caaactgtttatgactctcttgacgttcacgttggacaatgctacactgtcctcgtgaccgccgataaagagccaagggactattacatgattgcctcca |
100 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37645840 |
caaaatgtttatgactctcttgacgttcacgttggacaatgctacactgtcctcgtgaccgccgataaagagccaagggactattacatgattgcctcca |
37645741 |
T |
|
| Q |
101 |
cccgtatgaccaagtacaatctacttggaaagggtattgttcgttacaccaacggaaaaggtcccgcttcacctgtgctaccacctgcacctaccggttg |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||| |
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| T |
37645740 |
cccgtatgaccaagtacaatctagttggaaagggtattgttcgttacaccaacggaaaaggtcccgcttcacctttgctaccatctgcacctgtcggttg |
37645641 |
T |
|
| Q |
201 |
ggcttggtctctcaacc |
217 |
Q |
| |
|
||||||||||||||||| |
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| T |
37645640 |
ggcttggtctctcaacc |
37645624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 37651665 - 37651449
Alignment:
| Q |
1 |
caaactgtttatgactctcttgacgttcacgttggacaatgctacactgtcctcgtgaccgccgataaagagccaagggactattacatgattgcctcca |
100 |
Q |
| |
|
|||| ||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
37651665 |
caaaatgtctatgactctctcgacgttcatgttgggcaatgctacactgtcctcgtgaccgccgataaagagccaaaggactattacatggttgcctcca |
37651566 |
T |
|
| Q |
101 |
cccgtatgaccaagtacaatctacttggaaagggtattgttcgttacaccaacggaaaaggtcccgcttcacctgtgctaccacctgcacctaccggttg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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|
| T |
37651565 |
cccgtatgaccaagtacaatctacttggaaagggtattatacgttacaccaacggaaaaggtcccgcttcacctatgctaccacctgcacctgtcggttg |
37651466 |
T |
|
| Q |
201 |
ggcttggtctctcaacc |
217 |
Q |
| |
|
||||||||||||||||| |
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| T |
37651465 |
ggcttggtctctcaacc |
37651449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 32387981 - 32387929
Alignment:
| Q |
7 |
gtttatgactctcttgacgttcacgttggacaatgctacactgtcctcgtgac |
59 |
Q |
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|||||||| || |||||||||||||| |||||||||| | ||||||||||||| |
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| T |
32387981 |
gtttatgattcccttgacgttcacgtaggacaatgcttctctgtcctcgtgac |
32387929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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