View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12251_low_4 (Length: 442)
Name: NF12251_low_4
Description: NF12251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12251_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 19 - 435
Target Start/End: Original strand, 29243269 - 29243685
Alignment:
| Q |
19 |
aagagcagccataagagaggcctatatcgtcagagatggtgagacaacatgaaatctatttgggggctaaatttcagtcaatgagtcgaagaaacttggg |
118 |
Q |
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| T |
29243269 |
aagagcagccataagagaggcctatatcgtcagagatggtgagacaacatgaaatctatttgggggctaaatttcagtcaatgagtcgaagaaacttggg |
29243368 |
T |
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| Q |
119 |
tatagggttcactcgcgttgaagaagtaattttaggttatttgtattattgtttttcaaaaatttggaagctgatttatattttaacgttcttttataaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29243369 |
tatagggttcactcgcgttgaagaagtaattttaggttatttgtattattgtttttcaaaaatttggaagctgatttatattttaacgttcttttataaa |
29243468 |
T |
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| Q |
219 |
gtttgagtaaaaagatgattttggttaaagattataaaccagttctcttaataaagtttggtaattgacttttgaaaatttatggttcagttcatgaacc |
318 |
Q |
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| T |
29243469 |
gtttgagtaaaaagatgattttggttaaagattataaaccagttctcttaataaagtttggtaattgacttttgaaaatttatggttcagttcatgaacc |
29243568 |
T |
|
| Q |
319 |
atttaattggtttggtctcttatagttcagtgtggttcattttactcatatagttcattgaattagtatatttcgctcacccggacttcaatctatattt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29243569 |
atttaattggtttggtctcttatagttcagtgtggttcattttactcatatagttcattgaattagtatatttcgctcacccggacttcaatctatattt |
29243668 |
T |
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| Q |
419 |
atacccctcctttgctt |
435 |
Q |
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| T |
29243669 |
atacccctcctttgctt |
29243685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 362
Target Start/End: Complemental strand, 51554746 - 51554684
Alignment:
| Q |
301 |
tggttcagttcatgaaccatttaattggtttgg-tctcttatagttcagtgtggttcatttta |
362 |
Q |
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| T |
51554746 |
tggttcagttcatgaaccatttaatatatttggttcttttatggttcagtgtggttcaattta |
51554684 |
T |
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