View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12251_low_5 (Length: 434)
Name: NF12251_low_5
Description: NF12251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12251_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 17 - 321
Target Start/End: Complemental strand, 29594766 - 29594462
Alignment:
| Q |
17 |
agcttatatattttcagatttgatgaaaccttgtaaataaaatagaagactgagttgcaagatatgctctcttaaatttgtgtaatgcaaaaccaatcct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
29594766 |
agcttatatattttcagatttgatgaaaccttgtaaataaaatagaagactgagttgcaatatctgctctcttaaatttgtgtaatgcaaaaccaatcct |
29594667 |
T |
|
| Q |
117 |
ttgataaaattagtgtgattgaaaaagcttatcaaaaatcttacaaggtgttcaagatcaaactggtggtatattaatgttaatatctttgttattttag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
29594666 |
ttgataaaattagtgtgattgaaaaagcttataaaaaatcttacaaggtgttcaagatcaaactggtggtatattaacgttaatatctttgttattttag |
29594567 |
T |
|
| Q |
217 |
ttttgtttgtgttcattgggatttttatcatcagaagctcttgcaaaacttatacacatatcagataaccttcacgccaaattactggagaatgacaaga |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29594566 |
ttttgtttgtgttcattgggatttttatcattagaagctcttgcaaaacttatacacatatcagataaccttcacgccaaattactggagaatggcaaga |
29594467 |
T |
|
| Q |
317 |
agaat |
321 |
Q |
| |
|
||||| |
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|
| T |
29594466 |
agaat |
29594462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 17 - 321
Target Start/End: Complemental strand, 52077659 - 52077355
Alignment:
| Q |
17 |
agcttatatattttcagatttgatgaaaccttgtaaataaaatagaagactgagttgcaagatatgctctcttaaatttgtgtaatgcaaaaccaatcct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| || | |
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| T |
52077659 |
agcttatatattttcagatttgatgaaaccttgtaaataaaatagaagactgagttgcaatatctgctctcttaaatttgtgtaatgcaaaaccagtcat |
52077560 |
T |
|
| Q |
117 |
ttgataaaattagtgtgattgaaaaagcttatcaaaaatcttacaaggtgttcaagatcaaactggtggtatattaatgttaatatctttgttattttag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52077559 |
ttgataaaattagtgtgattgaaaaagcttatgaaaaatcttacaaggtgttcaagatcaaactggtggtatattaatgttaatatctttgttattttag |
52077460 |
T |
|
| Q |
217 |
ttttgtttgtgttcattgggatttttatcatcagaagctcttgcaaaacttatacacatatcagataaccttcacgccaaattactggagaatgacaaga |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||| |
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|
| T |
52077459 |
ttttgtttgtgttcattgggatttttatcattagaagctcttgcaaaacttatacccatatcagataaccttcacgccaaattagtggagaatggcaaga |
52077360 |
T |
|
| Q |
317 |
agaat |
321 |
Q |
| |
|
||||| |
|
|
| T |
52077359 |
agaat |
52077355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 17 - 321
Target Start/End: Original strand, 29058612 - 29058916
Alignment:
| Q |
17 |
agcttatatattttcagatttgatgaaaccttgtaaataaaatagaagactgagttgcaagatatgctctcttaaatttgtgtaatgcaaaaccaatcct |
116 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||| |
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|
| T |
29058612 |
agcttaaatattttcagatatgatgaaaccttgtaaataaaatagaagactgagttgcaagatctgctctcttaaatttgtgtaatgcaaagccagtcct |
29058711 |
T |
|
| Q |
117 |
ttgataaaattagtgtgattgaaaaagcttatcaaaaatcttacaaggtgttcaagatcaaactggtggtatattaatgttaatatctttgttattttag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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|
| T |
29058712 |
ttgataaaattagtgtgattgaaaaagcttatgaaaaatcttacaaggtgttcaagatcaaactagtggtatattgatgttaatatctttgttattttag |
29058811 |
T |
|
| Q |
217 |
ttttgtttgtgttcattgggatttttatcatcagaagctcttgcaaaacttatacacatatcagataaccttcacgccaaattactggagaatgacaaga |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||| |
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|
| T |
29058812 |
ttttgtttgtgttcattgggatttttatcattagaagctcttgcaaaacttatacccatatcagataaccttcacttcaaattactggagaatggcaaga |
29058911 |
T |
|
| Q |
317 |
agaat |
321 |
Q |
| |
|
||||| |
|
|
| T |
29058912 |
agaat |
29058916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 17 - 180
Target Start/End: Complemental strand, 52088461 - 52088298
Alignment:
| Q |
17 |
agcttatatattttcagatttgatgaaaccttgtaaataaaatagaagactgagttgcaagatatgctctcttaaatttgtgtaatgcaaaaccaatcct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| || | |
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|
| T |
52088461 |
agcttatatattttcagatttgatgaaaccttgtaaataaaatagaagactgagttgcaagacctgccctcttaaatttgtgtaatgcaaaaccagtcat |
52088362 |
T |
|
| Q |
117 |
ttgataaaattagtgtgattgaaaaagcttatcaaaaatcttacaaggtgttcaagatcaaact |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
52088361 |
ttgataaaattagtgtgattgaaaaagcttatgaaaaatcttacaaggtgttcaagatcaaact |
52088298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 318 - 402
Target Start/End: Original strand, 29059084 - 29059168
Alignment:
| Q |
318 |
gaataaattaaatgatatatctatgattgtaacatcaactttcccatcataaaaaacaacccttctttcccatgctaaacttcac |
402 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||| || ||||| |||||||||||||| |
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| T |
29059084 |
gaataaattaaatgatatatctatggttgtaacatcaactttcccataatagaaaacaacgctcctttcatatgctaaacttcac |
29059168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 318 - 403
Target Start/End: Complemental strand, 52077187 - 52077102
Alignment:
| Q |
318 |
gaataaattaaatgatatatctatgattgtaacatcaactttcccatcataaaaaacaacccttctttcccatgctaaacttcacc |
403 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||| || |||||||||| |||||| |||| |
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|
| T |
52077187 |
gaataaattaaatgatatatctatggttgtaacatcaactttcccatcatgggaaataactctcctttcccatgttaaactccacc |
52077102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 50 - 289
Target Start/End: Original strand, 51288555 - 51288793
Alignment:
| Q |
50 |
taaataaaatagaagactgagttgcaagatatgctctcttaaatttgtgtaatgcaaaaccaatcctttgataaaattagtgtgattgaaaaagcttatc |
149 |
Q |
| |
|
|||||||||||||| | |||||| ||| | |||||||||||||||| | || |||||||| ||| || ||||| ||||||||||||||||||||||| |
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|
| T |
51288555 |
taaataaaatagaaaattgagtttcaaattccgctctcttaaatttgtatgatccaaaaccagtccctttataaa-ttagtgtgattgaaaaagcttatg |
51288653 |
T |
|
| Q |
150 |
aaaaatcttacaaggtgttcaagatcaaactggtggtatattaatgttaatatctttgttattttagttttgtttgtgttcattggga-tttttatcatc |
248 |
Q |
| |
|
|||||| |||||||||||| ||||||| || ||| | ||||| |||||| |||||||| ||||||||||||||||||||||| ||||| |||||||||| |
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|
| T |
51288654 |
aaaaattttacaaggtgttaaagatcacaccggtag-atattgatgttagtatctttgctattttagttttgtttgtgttcagtgggattttttatcatt |
51288752 |
T |
|
| Q |
249 |
agaagctcttgcaaaacttatacacatatcagataaccttc |
289 |
Q |
| |
|
|| ||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
51288753 |
aggagctcttgcaaaatttatacccatatcagataaccttc |
51288793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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