View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12251_low_7 (Length: 392)
Name: NF12251_low_7
Description: NF12251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12251_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 19 - 376
Target Start/End: Original strand, 1156687 - 1157044
Alignment:
| Q |
19 |
tgaacatcactacaaaaaatgttttcaacatcacaagaggaaatcattgattgcatcattgatcgctcaatagatggtttctttcccaaaatcaaatcgg |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1156687 |
tgaacatcactacaaaatatgttttcaacatcacaagaggaaattattgattgcatcattaatcgctcaatagatggtttctttcccaaaaacaaatcgg |
1156786 |
T |
|
| Q |
119 |
ttagaggtgtcttggaaagcaaggaacacttaagcagatccaatacctgtacagaattagcactaatcaatcaaagacagtagtgaattgaaaaattaga |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||| | |
|
|
| T |
1156787 |
ttagaggtgtcttggaaagcaaggaacacttaagcagatccaatacctgtacataattagtacaaatcaatcaaagacagtagtgaattgaaaaattaaa |
1156886 |
T |
|
| Q |
219 |
gctaaaaagtggcgaataagagaaagtaccaagaaactatgaacactgatttaggaaacaaaaatgaattgcaaatataaaaccctttccttagtgacat |
318 |
Q |
| |
|
| |||||||||||||||||||| |||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1156887 |
gttaaaaagtggcgaataagagcaagtactaagaaactaagaacaatgatttaggaaacaaaaatgaattgcaaatataaaaccttttccttagtgacat |
1156986 |
T |
|
| Q |
319 |
tgacagtcatttcttttactgaacttgtgtttttcattcccaaattcttgatcagatc |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1156987 |
tgacagtcatttcttttactgaacttgtgtttttcattcccaaattcttgatcagatc |
1157044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 223 - 374
Target Start/End: Original strand, 23258909 - 23259061
Alignment:
| Q |
223 |
aaaagtggcgaataagagaaagtaccaagaaactatgaacactgatttaggaaacaaaaatgaattgcaaatat-aaaaccctttccttagtgacattga |
321 |
Q |
| |
|
|||| |||| ||| |||| ||| || || |||||| ||||| ||||||||| | ||||||| |||||||||||| |||||| ||||||| ||||||| || |
|
|
| T |
23258909 |
aaaaatggcaaattagagcaagaactaaaaaactaagaacaatgatttagggagcaaaaattaattgcaaatattaaaaccttttccttcgtgacataga |
23259008 |
T |
|
| Q |
322 |
cagtcatttcttttactgaacttgtgtttttcattcccaaattcttgatcaga |
374 |
Q |
| |
|
| ||||||||||||||||||||||||||| ||||| |||||| |||| |||| |
|
|
| T |
23259009 |
ccgtcatttcttttactgaacttgtgtttctcatttgcaaattattgaccaga |
23259061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 175
Target Start/End: Original strand, 23342220 - 23342289
Alignment:
| Q |
106 |
aaaatcaaatcggttagaggtgtcttggaaagcaaggaacacttaagcagatccaatacctgtacagaat |
175 |
Q |
| |
|
|||| |||||| ||||| |||||||| |||| ||| |||||||| ||||||||||||||||||| ||||| |
|
|
| T |
23342220 |
aaaaacaaatctgttagcggtgtctttgaaaacaaagaacacttcagcagatccaatacctgtagagaat |
23342289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 118 - 377
Target Start/End: Original strand, 23251051 - 23251304
Alignment:
| Q |
118 |
gttagaggtgtcttggaaagcaaggaacacttaagcagatccaatacctgtacagaattagcactaatcaatcaaagac---agtagtgaattgaaaaat |
214 |
Q |
| |
|
||||||||||||||||||| ||| |||||||| | ||||||||||||||| | | |||| |||||||||||||||| | |||||||||||| ||| |
|
|
| T |
23251051 |
gttagaggtgtcttggaaaacaatgaacactttaacagatccaatacctgcagaatattacttctaatcaatcaaagactaaaatagtgaattgaagaat |
23251150 |
T |
|
| Q |
215 |
tagagctaaaaagtggcgaataagagaaagtaccaagaaactatgaacactgatttaggaaacaaaaatgaattgcaaatataaaaccctttccttagtg |
314 |
Q |
| |
|
| ||||||||||| || |||| || ||||||||||| | ||| | |||||||| || || ||| || ||||||| || |||| ||| |
|
|
| T |
23251151 |
acaacttaaaaagtggcaaactagagcaattaccaagaaacaaggaatagtgatttagagaataa---------gcatatgtaaaacctttccctttgtg |
23251241 |
T |
|
| Q |
315 |
acattgacagtcatttcttttactgaacttgtgtttttcattcccaaattcttgatcagatca |
377 |
Q |
| |
|
|||||||| ||||||||||| | ||||||||| |||| ||||| || || ||| |||||||| |
|
|
| T |
23251242 |
acattgaccgtcatttctttgatcgaacttgtgctttttattccaaagttgttgctcagatca |
23251304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 347
Target Start/End: Original strand, 23316708 - 23316758
Alignment:
| Q |
297 |
aaaaccctttccttagtgacattgacagtcatttcttttactgaacttgtg |
347 |
Q |
| |
|
|||||| |||| ||||||||||| ||||||||||||||| | ||||||||| |
|
|
| T |
23316708 |
aaaaccttttctttagtgacatttacagtcatttcttttgcagaacttgtg |
23316758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 369
Target Start/End: Original strand, 23327061 - 23327138
Alignment:
| Q |
293 |
atataaaaccct-ttccttagtgacattgacagtcatttcttttactgaacttgtgtttttcattcccaaattcttga |
369 |
Q |
| |
|
|||||||| ||| ||||||||| |||||||||||||||| |||| |||||||||| |||| || || ||||||||| |
|
|
| T |
23327061 |
atataaaaacctgttccttagtaacattgacagtcatttgctttagtgaacttgtgctttttatcccataattcttga |
23327138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University