View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12252_high_12 (Length: 243)
Name: NF12252_high_12
Description: NF12252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12252_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 12799318 - 12799541
Alignment:
| Q |
1 |
cgatttcaacactagatatatttttcaaatatagatgttaatggatgacaaaattatttatagattcttgttaatgattgtctacaagacattctttaaa |
100 |
Q |
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| T |
12799318 |
cgatttcaacactagatatatttttcaaatatagatgttaatggacgacaaaattatttataggtttttgttaatgattgtctccaagacgttttttaaa |
12799417 |
T |
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| Q |
101 |
gatttttaattaagagttattgcttaaaaaagttaaatattttagcttttaatagtttgagtgcataattatcatataaacctatcgcttaaggttgtta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| || |
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| T |
12799418 |
gatttttaattaagagttattgcttaaaaaagttaaatattttagcttttaatagtttgagtgcataattttcatataaatctatcgcttaaggtt-ttt |
12799516 |
T |
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| Q |
201 |
aatattgcctcgagacacttgttag |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
12799517 |
aatattgcctcgagacacttgttag |
12799541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 46798695 - 46798646
Alignment:
| Q |
66 |
tcttgttaatgattgtctacaagacattctttaaagatttttaattaaga |
115 |
Q |
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||||| |||||| ||||| || |||||||||||||||||| ||||||||| |
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| T |
46798695 |
tcttgctaatgagtgtcttcatgacattctttaaagatttctaattaaga |
46798646 |
T |
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