View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12252_high_13 (Length: 233)
Name: NF12252_high_13
Description: NF12252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12252_high_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 37711291 - 37711090
Alignment:
| Q |
16 |
gatttggctcacaacaatttgaaaggtatgattccacaatgcctaggaacatttcctaatctctatattttggatatgcaaatgaacaacctctatggaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37711291 |
gatttggctcacaacaatttgaaaggtatgattccacaatgcctaggaacatttcctaatctctatgttttggatatgcaaatgaacaacctctatggaa |
37711192 |
T |
|
| Q |
116 |
gcattcctagaaccttttccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccacaatctttggctaactgttc |
215 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37711191 |
gcattcctagaacctttaccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggatcattaccacaatctttggctaactgttc |
37711092 |
T |
|
| Q |
216 |
at |
217 |
Q |
| |
|
|| |
|
|
| T |
37711091 |
at |
37711090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 37702469 - 37702270
Alignment:
| Q |
17 |
atttggctcacaacaatttgaaaggtatgattccacaatgcctaggaacatttcctaatctctatattttggatatgcaaatgaacaacctctatggaag |
116 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| || |||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37702469 |
atttggctcacaacaatttgacaggtatgattccacaatgtctgggaacatttcctcatctctctattttggatatgcaaatgaacaacctctatggaag |
37702370 |
T |
|
| Q |
117 |
cattcctagaaccttttccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccacaatctttggctaactgttca |
216 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| | |||||| |
|
|
| T |
37702369 |
cattcctagaaccttctccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccgcagtctttggctcaatgttca |
37702270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 16 - 217
Target Start/End: Original strand, 37401371 - 37401572
Alignment:
| Q |
16 |
gatttggctcacaacaatttgaaaggtatgattccacaatgcctaggaacatttcctaatctctatattttggatatgcaaatgaacaacctctatggaa |
115 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| |||||||| || ||| || | ||||||||||||||||||||||||||||||| |
|
|
| T |
37401371 |
gatttggctcacaacaatttgacaggtatgattccacaatgcctgggaacattaacttctcttaatgtattggatatgcaaatgaacaacctctatggaa |
37401470 |
T |
|
| Q |
116 |
gcattcctagaaccttttccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccacaatctttggctaactgttc |
215 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37401471 |
gcattcctagaacctttaccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccacaatctttggctaactgttc |
37401570 |
T |
|
| Q |
216 |
at |
217 |
Q |
| |
|
|| |
|
|
| T |
37401571 |
at |
37401572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 37639533 - 37639332
Alignment:
| Q |
16 |
gatttggctcacaacaatttgaaaggtatgattccacaatgcctaggaacatttcctaatctctatattttggatatgcaaatgaacaacctctatggaa |
115 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| |||||||| || ||| | | ||||||||||||||||||||||||||||||| |
|
|
| T |
37639533 |
gatttggctcacaacaatttgacaggtatgattccacaatgcctgggaacattaacttctcttactgtattggatatgcaaatgaacaacctctatggaa |
37639434 |
T |
|
| Q |
116 |
gcattcctagaaccttttccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccacaatctttggctaactgttc |
215 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37639433 |
gcattcctagaaccttctccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccacaatctttggctaactgttc |
37639334 |
T |
|
| Q |
216 |
at |
217 |
Q |
| |
|
|| |
|
|
| T |
37639333 |
at |
37639332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 37823691 - 37823490
Alignment:
| Q |
16 |
gatttggctcacaacaatttgaaaggtatgattccacaatgcctaggaacatttcctaatctctatattttggatatgcaaatgaacaacctctatggaa |
115 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| |||||||| | ||| || | ||||||||||||||||||||||||||||||| |
|
|
| T |
37823691 |
gatttggctcacaacaatttgacaggtatgattccacaatgcctgggaacattaaattctcttcatgtattggatatgcaaatgaacaacctctatggaa |
37823592 |
T |
|
| Q |
116 |
gcattcctagaaccttttccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccacaatctttggctaactgttc |
215 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37823591 |
gcattcctagaacctttaccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccacaatctttggctaactgttc |
37823492 |
T |
|
| Q |
216 |
at |
217 |
Q |
| |
|
|| |
|
|
| T |
37823491 |
at |
37823490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 37393251 - 37393451
Alignment:
| Q |
17 |
atttggctcacaacaatttgaaaggtatgattccacaatgcctaggaacatttcctaatctctatattttggatatgcaaatgaacaacctctatggaag |
116 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |||||||||||| || |||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37393251 |
atttggctcacaacaatttgacaggtatgattccacaatgtctaggaacattttcttatctctctattttggatatgcaaatgaacaacctctgtggaag |
37393350 |
T |
|
| Q |
117 |
cattcctagaaccttttccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccacaatctttggctaactgttca |
216 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
37393351 |
cattcctggaaccttttccaaaggaaatatatttgagactataaaattgaatggaaaccaattggaaggaccattaccacaatgtttggcttactgttca |
37393450 |
T |
|
| Q |
217 |
t |
217 |
Q |
| |
|
| |
|
|
| T |
37393451 |
t |
37393451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 37532886 - 37532686
Alignment:
| Q |
17 |
atttggctcacaacaatttgaaaggtatgattccacaatgcctaggaacatttcctaatctctatattttggatatgcaaatgaacaacctctatggaag |
116 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |||||||| || ||| || | ||||||||||||||||||||||||||||||| |
|
|
| T |
37532886 |
atttggctcacaacaatttgacaggtatgattccacaatgcctgggaacattaacttctcttaatgtattggatatgcaaatgaacaacctctatggaaa |
37532787 |
T |
|
| Q |
117 |
cattcctagaaccttttccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccacaatctttggctaactgttca |
216 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||| || |||||| || |||||||| |
|
|
| T |
37532786 |
cattcctagaaccttttccaaagaaaatgcatttcagactataaagttgaatggaaaccaattggaaggaccattaccccagtctttgtctcactgttca |
37532687 |
T |
|
| Q |
217 |
t |
217 |
Q |
| |
|
| |
|
|
| T |
37532686 |
t |
37532686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 37593990 - 37593790
Alignment:
| Q |
17 |
atttggctcacaacaatttgaaaggtatgattccacaatgcctaggaacatttcctaatctctatattttggatatgcaaatgaacaacctctatggaag |
116 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||| |||||||| || ||| || | ||||||||||||||||||||||||||||||| |
|
|
| T |
37593990 |
atttggctcacaacaatttaacaggtatgattccacaatgcctgggaacattaacttctcttaatgtattggatatgcaaatgaacaacctctatggaaa |
37593891 |
T |
|
| Q |
117 |
cattcctagaaccttttccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccacaatctttggctaactgttca |
216 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||| || |||||||| |
|
|
| T |
37593890 |
cattcctagaaccttttccaaagaaaatgcatttcagactataaagttgaatggaaaccaattggaaggaccattaccacagtctttgtctcactgttca |
37593791 |
T |
|
| Q |
217 |
t |
217 |
Q |
| |
|
| |
|
|
| T |
37593790 |
t |
37593790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 37696381 - 37696181
Alignment:
| Q |
17 |
atttggctcacaacaatttgaaaggtatgattccacaatgcctaggaacatttcctaatctctatattttggatatgcaaatgaacaacctctatggaag |
116 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||| |||||||| || ||| || | ||||||||||||||||||||||||||||||| |
|
|
| T |
37696381 |
atttggctcacaacaatttaacaggtatgattccacaatgcctgggaacattaacttctcttaatgtattggatatgcaaatgaacaacctctatggaaa |
37696282 |
T |
|
| Q |
117 |
cattcctagaaccttttccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccacaatctttggctaactgttca |
216 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||| || |||||||| |
|
|
| T |
37696281 |
cattcctagaaccttttccaaagaaaatgcatttcagactataaagttgaatggaaaccaattggaaggaccattaccacagtctttgtctcactgttca |
37696182 |
T |
|
| Q |
217 |
t |
217 |
Q |
| |
|
| |
|
|
| T |
37696181 |
t |
37696181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 37382700 - 37382896
Alignment:
| Q |
17 |
atttggctcacaacaatttgaaaggtatgattccacaatgcctaggaacatttcctaatctctatattttggatatgcaaatgaacaacctctatggaag |
116 |
Q |
| |
|
||||||||||||||||||| | || ||||||||||||||| | |||||||||||| ||| | | |||||||||||||||||||||||||||||| |
|
|
| T |
37382700 |
atttggctcacaacaatttaactggcatgattccacaatgcttgggaacatttccttctctttcggtattggatatgcaaatgaacaacctctatggaca |
37382799 |
T |
|
| Q |
117 |
cattcctagaaccttttccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccacaatctttggctaactgt |
213 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
37382800 |
cattcctagaaccttctccaaaggaaatgcatttgagacaataaagttgaatggaaaccgattggaaggaccattaccacagtctttggctcactgt |
37382896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 25 - 207
Target Start/End: Original strand, 37413547 - 37413729
Alignment:
| Q |
25 |
cacaacaatttgaaaggtatgattccacaatgcctaggaacatttcctaatctctatattttggatatgcaaatgaacaacctctatggaagcattccta |
124 |
Q |
| |
|
||||||||||| | ||| |||||||||||||||||||||||||||||| ||| | ||| ||||||||||||||||||||| | ||||||||| |||||| |
|
|
| T |
37413547 |
cacaacaatttaacaggcatgattccacaatgcctaggaacatttccttctctttctatattggatatgcaaatgaacaacttgtatggaagctttccta |
37413646 |
T |
|
| Q |
125 |
gaaccttttccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccacaatctttggct |
207 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||| || || ||||||||||||||||||||||| ||||||||| |
|
|
| T |
37413647 |
gaaccttttccaaaggaaatacatttgagatgataaagttgaacggaaatcaattggaaggaccattaccacagtctttggct |
37413729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 17 - 213
Target Start/End: Complemental strand, 37435496 - 37435300
Alignment:
| Q |
17 |
atttggctcacaacaatttgaaaggtatgattccacaatgcctaggaacatttcctaatctctatattttggatatgcaaatgaacaacctctatggaag |
116 |
Q |
| |
|
||||||| |||||||| |||| ||| || |||||| ||||||| |||||||||||| ||| | ||||||||||||||||||||||||| ||||||| |
|
|
| T |
37435496 |
atttggcccacaacaaattgacaggcataattccaaaatgcctgggaacatttccttttctttccgttttggatatgcaaatgaacaaccttaatggaag |
37435397 |
T |
|
| Q |
117 |
cattcctagaaccttttccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccacaatctttggctaactgt |
213 |
Q |
| |
|
||| |||| ||| ||||||| ||||||||| || ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||| |
|
|
| T |
37435396 |
catgcctaaaactttttccagaggaaatgccttcgagactataaagttgaatggcaaccaattagaaggaccattacctcaatctttggctcactgt |
37435300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 14553158 - 14552959
Alignment:
| Q |
17 |
atttggctcacaacaatttgaaaggtatgattccacaatgcctaggaacatttcctaatctctatattttggatatgcaaatgaacaacctctatggaag |
116 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| || ||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
14553158 |
atttggctcacaacaatttgacaggtatgattccacaatgcctggggacatttcctcttctctctattttggatatgcaaatgaacaacctctatggaat |
14553059 |
T |
|
| Q |
117 |
cattcctagaaccttttccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccacaatctttggctaactgttca |
216 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||| || |||||| |||||||| |
|
|
| T |
14553058 |
cattcctagaaccttttcaaaaggaaatgcatttgagactataaagttgaatggaaaccaattgaaaggaccactaccacagtcattggctcactgttca |
14552959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 16843370 - 16843570
Alignment:
| Q |
17 |
atttggctcacaacaatttgaaaggtatgattccacaatgcctaggaacatttcctaatctctatattttggatatgcaaatgaacaacctctatggaag |
116 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||| || | |||||||||||||||||||||||||||||||| |
|
|
| T |
16843370 |
atttggctcacaacaatttgacaggtatgattccacaatgcctaggaacattaacttctcttaatgtattggatatgcaaatgaacaacctctatggaag |
16843469 |
T |
|
| Q |
117 |
cattcctagaaccttttccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccacaatctttggctaactgttca |
216 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||| || |||||||| |
|
|
| T |
16843470 |
cattcctaaaaccttttccaaaggaaatgcatttcagactataaagttgaatggaaaccaattggaaggaccattaccacagtctttgtctcactgttca |
16843569 |
T |
|
| Q |
217 |
t |
217 |
Q |
| |
|
| |
|
|
| T |
16843570 |
t |
16843570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 24218105 - 24218300
Alignment:
| Q |
17 |
atttggctcacaacaatttgaaaggtatgattccacaatgcctaggaacatttcctaatctctatattttggatatgcaaatgaacaacctctatggaag |
116 |
Q |
| |
|
|||||||| |||||||||| | ||| | ||||||||||||||| |||||||||||| |||| | | | |||||||||||||||||||||||||||||||| |
|
|
| T |
24218105 |
atttggctaacaacaatttaacaggaacgattccacaatgcctgggaacatttccttatctttctgtattggatatgcaaatgaacaacctctatggaag |
24218204 |
T |
|
| Q |
117 |
cattcctagaaccttttccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccacaatctttggctaactg |
212 |
Q |
| |
|
||| |||| ||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||| |
|
|
| T |
24218205 |
catgcctaaaacattttcggaaggaaatgcattcgagactataaagttgaatggcaaccaattggagggaccattaccacagtctttggctcactg |
24218300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 16846034 - 16846238
Alignment:
| Q |
17 |
atttggctcacaacaatttgaaaggtatgat----tccacaatgcctaggaacatttcctaatctctatattttggatatgcaaatgaacaacctctatg |
112 |
Q |
| |
|
||||||||||||||||||| | | ||||||| |||||||||| | |||||||| || ||| || | ||||||||||||||||||||||||| || |
|
|
| T |
16846034 |
atttggctcacaacaatttaatatgtatgatatattccacaatgcttgggaacattaacttctcttaatgtattggatatgcaaatgaacaacctctttg |
16846133 |
T |
|
| Q |
113 |
gaagcattcctagaaccttttccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccattaccacaatctttggctaactg |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
16846134 |
gaagcattcctagaaccttttccaaaggaaatgtgtttgtcactataaagttgaatggcaaccaattggaaggaccattaccacggtctttagctaactg |
16846233 |
T |
|
| Q |
213 |
ttcat |
217 |
Q |
| |
|
||||| |
|
|
| T |
16846234 |
ttcat |
16846238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University