View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12252_high_4 (Length: 482)
Name: NF12252_high_4
Description: NF12252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12252_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 14 - 468
Target Start/End: Original strand, 41698522 - 41698978
Alignment:
| Q |
14 |
ttactactgctcatgaataaatgtctgagttagcatattatcctcattgtttatggcttgggcctcatttttaccctttaagagaaatttacttgttatc |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
41698522 |
ttactactgctcatgaataaatgtctgagttagcatattatcctcattgtttatggcttgggcctcatttttaacttttaagagaaatttacttgttatc |
41698621 |
T |
|
| Q |
114 |
ccctcacttatcatgttacaccccacaccctcaaatgttgtttatttcagttttgctctctctaattactttaatttt--tactgactcgccaaaacttt |
211 |
Q |
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| T |
41698622 |
ccctcacttatcaagttacaccccacaccctcaaatgttgtttatttcagttttgctctctttaattactttaatttttttactgactagccaaaacttt |
41698721 |
T |
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| Q |
212 |
ctaaacactaaccgaagtttccgaaactaaaattacagatatattataatgcccataatttcaaaaagaaaaacataagatgtctttgaaacacacctta |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41698722 |
ctaaacactaaccgaagtttccgaaactaaaattacagatatattataatgcccgtaatttcaaaaagaaaaacataagatgtctttgaaacacacctta |
41698821 |
T |
|
| Q |
312 |
gtgatgtcttgaatcaactaaatatctgaatttcaagtaggaaagatgtctttgaaatactcaattaggatcctgcggatatcttcctttgtttccatcg |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41698822 |
gtgatgtcttgaatcaactaaatatctgaatttcaagtaggaaagatgtctttgaaatactcaattaggatcctgcggatatcttcctttgtttccatcg |
41698921 |
T |
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| Q |
412 |
tattactaagattatcttagtaatgaacacacaaataatcttgtacacgtaaaaatt |
468 |
Q |
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| T |
41698922 |
tattactaagattatcttagtaatgaacacacaaataatcttgtacacgtaaaaatt |
41698978 |
T |
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