View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12252_high_5 (Length: 364)
Name: NF12252_high_5
Description: NF12252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12252_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 17 - 349
Target Start/End: Original strand, 46667516 - 46667848
Alignment:
| Q |
17 |
gttctggataatgtaagtagggaatttcccattcttggacattggaaggatgagggcatagttgcgtgaagacactaacacctaagaactttgaatatgt |
116 |
Q |
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| T |
46667516 |
gttctggataatgtaagtagggaatttcccattcttggacattggaaggatgagggcatggttgcgtgaagacactaacacctaagaactttgaatatgt |
46667615 |
T |
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| Q |
117 |
ccttacaccttttagctcaaaacaaattgagcaaatgtatattccacaaaccaccgcaatagctaaaactaccaacctcaatgttaatggaaatttcttt |
216 |
Q |
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| T |
46667616 |
ccttacaccttttagctcaaaacaaattgagcaaatgtatattccacaaaccaccgcaatagctaaaactaccaacctcaatgttaatggaaatttcttt |
46667715 |
T |
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| Q |
217 |
gtagattttatatctagtgaatcctgtaatccattaaattttgccaatgttagtctcaaatcacataattaaatataagcagttataaatgtgcatgtaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46667716 |
gtagattttatatctagtgaatcctgtaatccataaaattttgccaatgttagtctcaaatcacataattaaatataagcagttataaatgtgcatgtaa |
46667815 |
T |
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| Q |
317 |
taacaataacaaaagaagatcaccagagcttac |
349 |
Q |
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| T |
46667816 |
taacaataacaaaagaagatcaccagagcttac |
46667848 |
T |
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