View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12252_low_11 (Length: 298)
Name: NF12252_low_11
Description: NF12252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12252_low_11 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 38220549 - 38220841
Alignment:
| Q |
1 |
ctgatagtttcaaagtatcagtgacatcaagtatatatatcttagcaggcactataaa-tcatcccaatcaacccatttaacagtgtatcttaagtagag |
99 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38220549 |
ctgatagtttcaaagtatcagtaacatcaagtatatatatcttagcaggcactataaaatcatcccaatcaacccatttaacagtgtatcttaagtagag |
38220648 |
T |
|
| Q |
100 |
gcttctctttggaccctcaaaatcttccttcaacttgcactgtttagagtcataacaacataagaaacctcctttataatctgaccttattgaccttcca |
199 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38220649 |
gcttctctttggacgctcaaaaccttccttcaacttgcactgtttagagtcataacaacataagaaacctcctttataatctgaccttattgaccttcca |
38220748 |
T |
|
| Q |
200 |
tattcatccactgtaacattataaagctcacacttgcactcagtacaccctaacttatcctccacgccgcgcgtatcaatggcatgaacgttt |
292 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38220749 |
tattcatcaactgtaacattataaagctcacacttgcactcagtacaccctaacttatcctccacgccgcgcgtatcaatggcatgaacgttt |
38220841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 38238459 - 38238747
Alignment:
| Q |
1 |
ctgatagtttcaaagtatcagtgacatcaagtatatatatcttagcaggcactataaa-tcatcccaatcaacccatttaacagtgtatcttaagtagag |
99 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38238459 |
ctgatagtttcaaagtatcagtaacatcaagtatatatatcttaacaggcactataaaatcatcccaatcaacccatttaacagtgtatcttaagtagag |
38238558 |
T |
|
| Q |
100 |
gcttctctttggaccctcaaaatcttccttcaacttgcactgtttagagtcataacaacataagaaacctcctttataatctgaccttattgaccttcca |
199 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||| || ||||||||| |
|
|
| T |
38238559 |
gcttctctttggaccctcaaaaccttccttcaacttgcactgtttagaatcataacaacataacaaacctcctttataatctggcctaatagaccttcca |
38238658 |
T |
|
| Q |
200 |
tattcatccactgtaacattataaagctcacacttgcactcagtacaccctaacttatcctccacgccgcgcgtatcaatggcatgaac |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||| ||| |||||||| ||||||||||| |
|
|
| T |
38238659 |
tattcatccactgtaacattataaagctcacacttacactcagtgcaccctaatttatcctttgtgcctcgcgtatcgatggcatgaac |
38238747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 38226930 - 38227218
Alignment:
| Q |
1 |
ctgatagtttcaaagtatcagtgacatcaagtatatatatcttagcaggcactataaa-tcatcccaatcaacccatttaacagtgtatcttaagtagag |
99 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
38226930 |
ctgatggtttcaaagtatcagtaacatcaagtatatatatcttaacaggcactataaaatcatcccaatcaacccattttacagtgtatcttaggtagag |
38227029 |
T |
|
| Q |
100 |
gcttctctttggaccctcaaaatcttccttcaacttgcactgtttagagtcataacaacataagaaacctcctttataatctgaccttattgaccttcca |
199 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||| || ||||||||||||||| ||||||||||||||||||| || || ||||||||| |
|
|
| T |
38227030 |
acttctctttggaccctcaaaaccttccttcaacttgcattgtgtatggtcataacaacataacaaacctcctttataatctggcccaatagaccttcca |
38227129 |
T |
|
| Q |
200 |
tattcatccactgtaacattataaagctcacacttgcactcagtacaccctaacttatcctccacgccgcgcgtatcaatggcatgaac |
288 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||| |||||||| |||||||| |||| |||||||||||||||||||| |
|
|
| T |
38227130 |
tattcatccactgtaacattataaaggtcgcacttgcactcagtgcaccctaatttatcctctgcgcctcgcgtatcaatggcatgaac |
38227218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 38243397 - 38243685
Alignment:
| Q |
1 |
ctgatagtttcaaagtatcagtgacatcaagtatatatatcttagcaggcactataaa-tcatcccaatcaacccatttaacagtgtatcttaagtagag |
99 |
Q |
| |
|
||||| |||||| | |||| || ||||||| || |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38243397 |
ctgattgtttcatactatcggtaacatcaattacatatatcttaagaggcactataaaatcatcccaatcaacccatttaacagtgtatcttaagtagag |
38243496 |
T |
|
| Q |
100 |
gcttctctttggaccctcaaaatcttccttcaacttgcactgtttagagtcataacaacataagaaacctcctttataatctgaccttattgaccttcca |
199 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| || | |||||||||||||| |||||||||||||||||| |||||| ||||||||| |
|
|
| T |
38243497 |
gcttctctttggaccctcaaaaccttccttcaacttgcactgtgtacaatcataacaacataaccaacctcctttataatctggccttatagaccttcca |
38243596 |
T |
|
| Q |
200 |
tattcatccactgtaacattataaagctcacacttgcactcagtacaccctaacttatcctccacgccgcgcgtatcaatggcatgaac |
288 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||| || ||||||||||||||||| |
|
|
| T |
38243597 |
tattcatccaccgtaacattataaagctcgcacttacactcagtgcaccctaacttatcctctacgccacgtgtatcaatggcatgaac |
38243685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 38214507 - 38214795
Alignment:
| Q |
1 |
ctgatagtttcaaagtatcagtgacatcaagtatatatatcttagcaggcactataaa-tcatcccaatcaacccatttaacagtgtatcttaagtagag |
99 |
Q |
| |
|
||||| |||||||| ||||||| ||||||| |||||||||||| ||||||| ||||| ||||||||||| |||||||| ||||||||||||| ||||| |
|
|
| T |
38214507 |
ctgatggtttcaaactatcagtaacatcaattatatatatcttcacaggcacaataaaatcatcccaatcgacccattttacagtgtatcttagatagag |
38214606 |
T |
|
| Q |
100 |
gcttctctttggaccctcaaaatcttccttcaacttgcactgtttagagtcataacaacataagaaacctcctttataatctgaccttattgaccttcca |
199 |
Q |
| |
|
||||||||||| ||||||||| |||||||||| || |||||| || | |||||||||||||| |||||||||| |||||||||||| || ||||||||| |
|
|
| T |
38214607 |
acttctctttggcccctcaaaaccttccttcaatttacactgtgtataatcataacaacataacaaacctccttcataatctgacctaatagaccttcca |
38214706 |
T |
|
| Q |
200 |
tattcatccactgtaacattataaagctcacacttgcactcagtacaccctaacttatcctccacgccgcgcgtatcaatggcatgaac |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
38214707 |
tattcatccactgtaacattataaagctcacacttacactcggtgcaccctaacttatcctctgcgccgcgcgtatcgatggcatgaac |
38214795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 38253660 - 38253948
Alignment:
| Q |
1 |
ctgatagtttcaaagtatcagtgacatcaagtatatatatcttagcaggcactataaa-tcatcccaatcaacccatttaacagtgtatcttaagtagag |
99 |
Q |
| |
|
||||| |||||||||||||||| ||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
38253660 |
ctgatggtttcaaagtatcagtaacatcaattatatatatcttaacaggcactataaaatcatcccaatcaacccatttcactgtgtatcttaagtagag |
38253759 |
T |
|
| Q |
100 |
gcttctctttggaccctcaaaatcttccttcaacttgcactgtttagagtcataacaacataagaaacctcctttataatctgaccttattgaccttcca |
199 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||||||||| || || |||||||||||||| | ||||||||||||||| | ||||| |||||||| |
|
|
| T |
38253760 |
gtttctctttggaccctcaaaaccttccttcaacttgcaccgtgtatgatcataacaacataacatacctcctttataatcaggccttacagaccttccg |
38253859 |
T |
|
| Q |
200 |
tattcatccactgtaacattataaagctcacacttgcactcagtacaccctaacttatcctccacgccgcgcgtatcaatggcatgaac |
288 |
Q |
| |
|
|| |||||||| ||||||||||||||||| ||||| ||||| || ||||||||||||||||| | || || ||||| ||||||||||| |
|
|
| T |
38253860 |
tactcatccaccgtaacattataaagctcgcacttacactcggtgcaccctaacttatcctctgcacctcgtgtatcgatggcatgaac |
38253948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 38248545 - 38248833
Alignment:
| Q |
1 |
ctgatagtttcaaagtatcagtgacatcaagtatatatatcttagcaggcactataaa-tcatcccaatcaacccatttaacagtgtatcttaagtagag |
99 |
Q |
| |
|
|||||||||||||| || |||||||||||| ||||||||||||| | ||||||||||| ||||||||||||||||| || || ||| |||||||||| || |
|
|
| T |
38248545 |
ctgatagtttcaaactaccagtgacatcaattatatatatcttaacgggcactataaaatcatcccaatcaacccactttactgtgcatcttaagtaaag |
38248644 |
T |
|
| Q |
100 |
gcttctctttggaccctcaaaatcttccttcaacttgcactgtttagagtcataacaacataagaaacctcctttataatctgaccttattgaccttcca |
199 |
Q |
| |
|
||||||||| || || || ||| ||||||||||||||||| || |||| |||||||||||||| ||||||||||||||||||| ||| || || ||||| |
|
|
| T |
38248645 |
gcttctcttaggtccttcgaaaccttccttcaacttgcaccgtgtagaatcataacaacataacaaacctcctttataatctggcctaatagattttcca |
38248744 |
T |
|
| Q |
200 |
tattcatccactgtaacattataaagctcacacttgcactcagtacaccctaacttatcctccacgccgcgcgtatcaatggcatgaac |
288 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||| || ||||| |||||||| |||||||| ||| |||||||| ||||||||||| |
|
|
| T |
38248745 |
tactcatccactgtaacattataaaggtcacacttacattcagtgcaccctaatttatcctctgtgccacgcgtatcgatggcatgaac |
38248833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 124; Significance: 8e-64; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 17455160 - 17455447
Alignment:
| Q |
1 |
ctgatagtttcaaagtatcagtgacatcaagtatatatatcttagcaggcactataaat-catcccaatcaacccatttaacagtgtatcttaagtagag |
99 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| ||| ||| ||||| ||| ||||||||| ||||||||||||||||||| | ||||| | | || || |
|
|
| T |
17455160 |
ctgatagtttcaaactatcagtaacatcaattatgtatgtcttaagaggaactataaattcatcccaatcaacccatttgattttgtatttcagataaag |
17455259 |
T |
|
| Q |
100 |
gcttctctttggaccctcaaaatcttccttcaacttgcactgtttagagtcataacaacataagaaacctcctttataatctgaccttattgaccttcca |
199 |
Q |
| |
|
||||||||||| |||| |||| |||||||||||||||| ||| || |||||||||||| | ||||||||||||||||| ||| ||| | ||||||| |
|
|
| T |
17455260 |
acttctctttggtcccttaaaaccttccttcaacttgcattgtgtattatcataacaacatgacaaacctcctttataatcagacattaaaggccttcca |
17455359 |
T |
|
| Q |
200 |
tattcatccactgtaacattataaagctcacacttgcactcagtacaccctaacttatcctccacgccgcgcgtatcaatggcatgaa |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||| || ||||| |||||||||| |
|
|
| T |
17455360 |
tattcatccactgtaacattataaagctcacacttgcactcagtgcaccctagcttatcctctacgccacgtgtatcgatggcatgaa |
17455447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 2 - 287
Target Start/End: Original strand, 17434061 - 17434347
Alignment:
| Q |
2 |
tgatagtttcaaagtatcagtgacatcaagtatatatatcttagcaggcactataaa-tcatcccaatcaacccatttaacagtgtatcttaagtagagg |
100 |
Q |
| |
|
||||||||| ||| ||||||| ||||||| ||| ||| |||| ||||||||||||| ||||||||||||| |||||| | ||||| | | ||||| |
|
|
| T |
17434061 |
tgatagttttaaactatcagtaacatcaattatgtatgccttaacaggcactataaaatcatcccaatcaatccatttgattttgtatttcagatagaga |
17434160 |
T |
|
| Q |
101 |
cttctctttggaccctcaaaatcttccttcaacttgcactgtttagagtcataacaacataagaaacctcctttataatctgaccttattgaccttccat |
200 |
Q |
| |
|
||||||||||| ||||||||| || ||||||||||||| ||| || |||| ||||||| | ||| |||||||||||| | |||| | ||||||| |
|
|
| T |
17434161 |
cttctctttggtccctcaaaacctaccttcaacttgcattgtgtattatcatgacaacatttcataccccctttataatctaaacttaaaggtcttccat |
17434260 |
T |
|
| Q |
201 |
attcatccactgtaacattataaagctcacacttgcactcagtacaccctaacttatcctccacgccgcgcgtatcaatggcatgaa |
287 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| || ||||| |||||||||| |
|
|
| T |
17434261 |
attcatccactgttacattataaagctcacacttgcattcagtgcaccctaacttatcctctacgccacgtgtatcgatggcatgaa |
17434347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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