View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12252_low_3 (Length: 493)
Name: NF12252_low_3
Description: NF12252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12252_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 34966893 - 34967131
Alignment:
| Q |
18 |
acaaattacaacctatttataccattcagtaccatttggacttcaactgaagctacccttttcttcaagcaacaactgtcttcattttataacacactaa |
117 |
Q |
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| T |
34966893 |
acaaattacaacctatttataccattcagtaccatttggacttcaattgaagctacccttttcttcaagcaacaactgtcttcattttataacacactaa |
34966992 |
T |
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| Q |
118 |
tacatctttcgtcattactaataaaatttatcattaagtgggtgtcctttctttgcatgttgtctctcagcataccaacattctgatccatacaccgtca |
217 |
Q |
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| T |
34966993 |
tatatctttcgtcattactaataaaatttatcattaagtgggtgtcctttctatgcatgttgtctctcagcataccaacattctgatccatacaccgtca |
34967092 |
T |
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| Q |
218 |
ttgtatgaccaccacatacattgactctcacaatatagc |
256 |
Q |
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| T |
34967093 |
ttgtatgatcaccgcatacattgactctcacaatatagc |
34967131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 249 - 396
Target Start/End: Original strand, 18426180 - 18426326
Alignment:
| Q |
249 |
aatatagcattcttattcttattaaagaaataaaagcaaaactgacaattaaaacagtatggacaacgtcaatcaggagcaaaacatgaatatgcaattc |
348 |
Q |
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| T |
18426180 |
aatatagcactcttattcttattaaagaactaaaaccaaaactgacaattaaa-cagtatggacaacgtcaaacaggagcaaaacatgaatatgcaattc |
18426278 |
T |
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| Q |
349 |
aaagtagaaacaatggcttacatcatttcagctcctcttaagcttttc |
396 |
Q |
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| T |
18426279 |
aaagtagaaatacaggcttacatcatttcagcttctcttgagtttttc |
18426326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 18425359 - 18425429
Alignment:
| Q |
178 |
tgtctctcagcataccaacattctgatccatacaccgtcattgtatgaccaccacatacattgactctcac |
248 |
Q |
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| T |
18425359 |
tgtctctcagcatcccagcattctgatccatgcaccataattggatgatcaccacattcattgacactcac |
18425429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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