View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12252_low_6 (Length: 360)
Name: NF12252_low_6
Description: NF12252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12252_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 349
Target Start/End: Original strand, 8515804 - 8516134
Alignment:
| Q |
19 |
cggtcaacaatagaccacgtatcaagacggtccaacataacactattgtaggtatttatgcatagtaaatcatatcactatctattagggctgccttaat |
118 |
Q |
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| T |
8515804 |
cggtcaacaatagaccacgtatcaagacggtccaacataacactattgtaggtatttatgcatagtaaatcatatcactatctattagggctaccttaat |
8515903 |
T |
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| Q |
119 |
ttgaatgagagaatatgaattgattggttatgtttgtttggcagatcaagaaattgcacagcacaataggaaggtccatgtaatcgcaggtgacagatat |
218 |
Q |
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| T |
8515904 |
ttgaatgagagaatatgaattgattggttatgtttgtttggcagatcaagaaattgcacagcacaataggaaggtccatgtaatcgcaggtgacagatat |
8516003 |
T |
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| Q |
219 |
aaactacctttcattaactagatatgttactgaaataacaaaaacttaggctcattgttgttttgttttggaattgtggtttcagggacagttacagcat |
318 |
Q |
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| T |
8516004 |
aaactaactttcattaactagatatgtttctgaaataacaaaaacttaggctcattgttgttttgttttttaattgtggtttcagggacagttacagcat |
8516103 |
T |
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| Q |
319 |
tctcagctgcaggggcaattggaattggagc |
349 |
Q |
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| T |
8516104 |
tctcagctgcaggggcaattggaattggagc |
8516134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 55371943 - 55372003
Alignment:
| Q |
151 |
tttgtttggcagatcaagaaattgcacagcacaataggaaggtccatgtaatcgcaggtga |
211 |
Q |
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| T |
55371943 |
tttgtttggcagatcatgagaatgcaaggcacagtaggaatgtccatgtaattgcaggtga |
55372003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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