View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12252_low_7 (Length: 337)

Name: NF12252_low_7
Description: NF12252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12252_low_7
NF12252_low_7
[»] chr1 (17 HSPs)
chr1 (19-337)||(8640179-8640498)
chr1 (136-203)||(35203179-35203246)
chr1 (136-201)||(45526202-45526267)
chr1 (136-201)||(35476995-35477060)
chr1 (140-201)||(35222789-35222850)
chr1 (136-201)||(35295194-35295259)
chr1 (148-200)||(35265360-35265412)
chr1 (136-200)||(35272922-35272986)
chr1 (140-203)||(35192839-35192902)
chr1 (148-203)||(35216970-35217025)
chr1 (148-201)||(35206425-35206478)
chr1 (136-201)||(35213583-35213648)
chr1 (136-201)||(45534406-45534471)
chr1 (146-200)||(35228446-35228500)
chr1 (136-201)||(35145228-35145293)
chr1 (165-201)||(19267391-19267427)
chr1 (136-183)||(35253954-35254001)
[»] chr2 (1 HSPs)
chr2 (136-201)||(33137641-33137706)
[»] chr3 (4 HSPs)
chr3 (136-201)||(17663862-17663927)
chr3 (136-201)||(19246363-19246428)
chr3 (139-201)||(898925-898987)
chr3 (146-194)||(53921123-53921171)
[»] chr7 (2 HSPs)
chr7 (157-201)||(38635327-38635371)
chr7 (157-201)||(38633580-38633624)


Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 19 - 337
Target Start/End: Complemental strand, 8640498 - 8640179
Alignment:
Q  19 agccctctctaatcatcctatcctcactcgtgatggtcgaatggtatattattgtattcttctttcttccaatttctctccattgaaatgtttat-atta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8640498 agccctctctaatcatcctatcctcactcgtgatggtcgaatggtatattattgtattcttctttcttccaatttctctccattgaaatgtttattatta 8640399  T
Q  118 atgctcttcgatttatttatgcagagcgttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctctctcttttggttgggctg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8640398 atgctcttcgatttatttatgcagagcgttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctctctcttttggttgggctg 8640299  T
Q  218 gcgttgcttgggaagattttgagcaaaatcgtaactggacttctatgccggattccaggtttcctcttaacttttctattatgtgtagtagtatgaagtt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8640298 gcgttgcttgggaagattttgagcaaaatcgtaactggacttctatgccggattccaggtttcctcttaacttttctattatgtgtagtagtatgaagtt 8640199  T
Q  318 taagtaaaaatttgacattc 337  Q
    ||||||||||||||||||||    
T  8640198 taagtaaaaatttgacattc 8640179  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 35203246 - 35203179
Alignment:
Q  136 atgcagagcgttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctctctc 203  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35203246 atgcagagcattcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctctc 35203179  T

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Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 45526267 - 45526202
Alignment:
Q  136 atgcagagcgttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 201  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  45526267 atgcagagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 45526202  T

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Target: chr1; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 35477060 - 35476995
Alignment:
Q  136 atgcagagcgttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 201  Q
    ||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  35477060 atgcagagccttcaattggatagaaagagtgggaaaaagtgttacatgcttgctgctagatctctc 35476995  T

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Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 35222850 - 35222789
Alignment:
Q  140 agagcgttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 201  Q
    |||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||    
T  35222850 agagcgttcaattggatagaaagagtggaaaaaagtgtgtcatgcttgctgctagatctctc 35222789  T

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Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 35295194 - 35295259
Alignment:
Q  136 atgcagagcgttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 201  Q
    ||||||||| |||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||    
T  35295194 atgcagagctttcaattggagagaaagagtgggaaaaagtgttatatgcttgctgctagatctctc 35295259  T

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Target: chr1; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 35265412 - 35265360
Alignment:
Q  148 caattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctct 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35265412 caattggacagaaagagtggaaaaaagtgttacatgctttctgctagatctct 35265360  T

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Target: chr1; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 35272986 - 35272922
Alignment:
Q  136 atgcagagcgttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctct 200  Q
    ||||||||| ||||||| || |||||||||||||||||||||||||||||| |||||||||||||    
T  35272986 atgcagagcattcaattagagagaaagagtggaaaaaagtgttacatgctttctgctagatctct 35272922  T

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Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 140 - 203
Target Start/End: Complemental strand, 35192902 - 35192839
Alignment:
Q  140 agagcgttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctctctc 203  Q
    ||||| |||||||||| || |||||||||||||||||||| |||||||||||||||||||||||    
T  35192902 agagctttcaattggataggaagagtggaaaaaagtgttatatgcttgctgctagatctctctc 35192839  T

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Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 203
Target Start/End: Complemental strand, 35217025 - 35216970
Alignment:
Q  148 caattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctctctc 203  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  35217025 caattggatagaaagagtggaaaaaagtgttacatgctttctgctagatctctctc 35216970  T

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Target: chr1; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 35206478 - 35206425
Alignment:
Q  148 caattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 201  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  35206478 caattggatagaaagagtggaaaaaagtgttacatgctttctgctagatctctc 35206425  T

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Target: chr1; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 35213648 - 35213583
Alignment:
Q  136 atgcagagcgttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 201  Q
    ||||||||| |||||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||    
T  35213648 atgcagagctttcaattggagagaaaaagtggaaaaaaatgttatatgcttgctgctagatctctc 35213583  T

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Target: chr1; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 45534471 - 45534406
Alignment:
Q  136 atgcagagcgttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 201  Q
    ||||||||| ||||||| || ||||| ||||| |||||||||||||||||||||||||||||||||    
T  45534471 atgcagagctttcaattagatagaaatagtgggaaaaagtgttacatgcttgctgctagatctctc 45534406  T

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Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 35228500 - 35228446
Alignment:
Q  146 ttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctct 200  Q
    |||||||||| |||||||||||||| |||||||| |||||| |||||||||||||    
T  35228500 ttcaattggagagaaagagtggaaagaagtgttatatgctttctgctagatctct 35228446  T

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Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 35145293 - 35145228
Alignment:
Q  136 atgcagagcgttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 201  Q
    ||||| ||| |||||||| | ||| ||||| ||||||||||||||||| || ||||||||||||||    
T  35145293 atgcaaagctttcaattgaatagagagagtagaaaaaagtgttacatggtttctgctagatctctc 35145228  T

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Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 19267391 - 19267427
Alignment:
Q  165 tggaaaaaagtgttacatgcttgctgctagatctctc 201  Q
    |||||||||||||||||| ||||||||||||||||||    
T  19267391 tggaaaaaagtgttacattcttgctgctagatctctc 19267427  T

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Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 35254001 - 35253954
Alignment:
Q  136 atgcagagcgttcaattggacagaaagagtggaaaaaagtgttacatg 183  Q
    ||||||||  |||||||||| ||||||||||||||||| |||||||||    
T  35254001 atgcagagttttcaattggatagaaagagtggaaaaaattgttacatg 35253954  T

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Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 33137641 - 33137706
Alignment:
Q  136 atgcagagcgttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 201  Q
    ||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  33137641 atgcagagctttcaattgcacagaaagagtggacaaaagtgttacatgcttgctgctagatctctc 33137706  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 17663862 - 17663927
Alignment:
Q  136 atgcagagcgttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 201  Q
    ||||||||| |||||||| | |||||||||||| | ||||||||| ||||||||||||||||||||    
T  17663862 atgcagagctttcaattgcaaagaaagagtggacagaagtgttacctgcttgctgctagatctctc 17663927  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 19246363 - 19246428
Alignment:
Q  136 atgcagagcgttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 201  Q
    ||||||||| |||||||| | |||||||||||| | ||||||||| ||||||||||||||||||||    
T  19246363 atgcagagctttcaattgcaaagaaagagtggacagaagtgttacctgcttgctgctagatctctc 19246428  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 898925 - 898987
Alignment:
Q  139 cagagcgttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 201  Q
    |||||| || ||||||| || || ||||||||||  ||||||||||||||||| |||||||||    
T  898925 cagagctttaaattggataggaaaagtggaaaaatatgttacatgcttgctgccagatctctc 898987  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 53921123 - 53921171
Alignment:
Q  146 ttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgctag 194  Q
    |||||||||| ||||||||||| ||||| |||| ||||||| |||||||    
T  53921123 ttcaattggatagaaagagtgggaaaaaatgttgcatgctttctgctag 53921171  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 38635371 - 38635327
Alignment:
Q  157 agaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 201  Q
    |||||||||||||||||||||||||| |||||||||| |||||||    
T  38635371 agaaagagtggaaaaaagtgttacattcttgctgctaaatctctc 38635327  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 38633624 - 38633580
Alignment:
Q  157 agaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 201  Q
    |||||||||||||||||||||| ||| |||||||||| |||||||    
T  38633624 agaaagagtggaaaaaagtgttgcatccttgctgctaaatctctc 38633580  T

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