View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12252_low_9 (Length: 318)
Name: NF12252_low_9
Description: NF12252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12252_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 302
Target Start/End: Complemental strand, 13974339 - 13974033
Alignment:
| Q |
11 |
aagaagcataaaaaactatgagatacaagtgaatgattttattatataaaattccactataagagggggaaagaaggaaaattcgaaaaattaaatgcaa |
110 |
Q |
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| T |
13974339 |
aagaagcataaaaaactatgagatacaagtgaatgattttattatataaaataccactataaaagggggaaagaaggaaaattcgaaaaattaaatgcaa |
13974240 |
T |
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| Q |
111 |
aacattgtaca------------catacggttttatctgtcaatgccattttagcgatggaaatgagagagaggatgttgtaggccttggatgtgaagac |
198 |
Q |
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| T |
13974239 |
aacattgtacaagacaagatgcacatacggttttatctgtcaatgccattttagcgatggaaatgagagagaggatgttgtaggccttggatgtgaagac |
13974140 |
T |
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| Q |
199 |
aatcatggatgttgctagagtaaagagagacctgcggcgtgatgcttgcagtttaactgaaaaaagaaa---gaagtgcttcaaaaataggcaacttaac |
295 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
13974139 |
aatcatggatgttgctagtgtaaagagagacctgcggcgtgatgcttgcagtttaactgaaaaaagaaagaagaagtgcttcaaaaataggcaacttaac |
13974040 |
T |
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| Q |
296 |
aatgatt |
302 |
Q |
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||||||| |
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| T |
13974039 |
aatgatt |
13974033 |
T |
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