View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12253_high_1 (Length: 655)
Name: NF12253_high_1
Description: NF12253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12253_high_1 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 555; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 19 - 655
Target Start/End: Original strand, 1189700 - 1190336
Alignment:
| Q |
19 |
atttgtgtgtcaagtatttgattatatatgcaataaaatggagatatatttcctcttcaaatggacaggccccaaatatggtgtttgtttaatagagcag |
118 |
Q |
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| T |
1189700 |
atttgtgtgtcaagtatt-gattatatatgcaataaaatggagatatatttcctcttcaaatggacaggccccaaatatggtgtttgtttaatagagcag |
1189798 |
T |
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| Q |
119 |
aagcatttnnnnnnnnnngtgacagaaattttattaaccgcaacctaagcacaagacatgctaatatcagagcaccacaatcaattagacgttaacttga |
218 |
Q |
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| T |
1189799 |
aagcatttaaaaaaaaaagtgacagaaattttattaaccgcaacctaagcacaagacatgctaatatcagagcaccacaatcaattagacgttaacttga |
1189898 |
T |
|
| Q |
219 |
aacttcaattgaccaggacccctataaatatgaggtatgttattttaacatcaaaatacatgcaatgtatgtgtttagctatatatatcttactttttat |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1189899 |
aacttcaattgaccaggacccctataaatatgaggtatgttattttaacatcaaaatacatgcaatgtatgtgtttatctatatatatcttactttttat |
1189998 |
T |
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| Q |
319 |
tttctaaaacttgctcacattttaaaattacacacgaaaatcatacaacactatgcgacatcagtcaacattttgatctcaaaaatcatttctcctataa |
418 |
Q |
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| T |
1189999 |
tttctaaaacttgctcacattttaaaattacacacgaaaatcatacaacactatgcgacatcagtcaacattttgatctcaaaaatcatttctcctataa |
1190098 |
T |
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| Q |
419 |
acataaataatcagtacctctaaatgtaatgttaaccgaacatattgcagcaatttagttcctatgctt-nnnnnnnnnnncctagaccattttgttttc |
517 |
Q |
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| T |
1190099 |
acataaataatcagtacctctaaatgtaatgttaaccgaacatattgcagcaatttagttcctatgcttaaaaaaaaaaaacctagaccattttgttttc |
1190198 |
T |
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| Q |
518 |
cacttcaggaaaggtcaccacctcatttacacgtccattggtatagactacattaatacctctgcacaattttgatacaacaaatggtccactgcactga |
617 |
Q |
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| T |
1190199 |
cacttcaggaaaggtcaccacctcatttacacgtccattggtatagactacattaatacctctgcacaattttgatacaacaaatggtccactgcactga |
1190298 |
T |
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| Q |
618 |
tttttgtatcactgttccactttttagcaccacctgtc |
655 |
Q |
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| T |
1190299 |
tttttgtatcactgttccactttttagcaccacctgtc |
1190336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 500 - 645
Target Start/End: Original strand, 153729 - 153871
Alignment:
| Q |
500 |
ctagaccattttgttttccacttcaggaaaggtcaccacctcatttacacgtccattggtatagactacattaatacctctgcacaattttgatacaaca |
599 |
Q |
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| T |
153729 |
ctagaccattttgttttccacttcaagaaaggtcaccacctcagtcacacttccattgctatagatta---tcatacctctgcacaattttgatacaaca |
153825 |
T |
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| Q |
600 |
aatggtccactgcactgatttttgtatcactgttccactttttagc |
645 |
Q |
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| T |
153826 |
aatggtccactgcactgatttttgtatcactgttccactttttagc |
153871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 500 - 645
Target Start/End: Complemental strand, 150702 - 150560
Alignment:
| Q |
500 |
ctagaccattttgttttccacttcaggaaaggtcaccacctcatttacacgtccattggtatagactacattaatacctctgcacaattttgatacaaca |
599 |
Q |
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| T |
150702 |
ctagaccattttgttttccacttcaagaaatgtcaccacctcagtcacacttccattgctatagatta---tcatacctctgcacaattttgatacaaca |
150606 |
T |
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| Q |
600 |
aatggtccactgcactgatttttgtatcactgttccactttttagc |
645 |
Q |
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| T |
150605 |
aatggtccactgcagtgatttctgtatcactgttccactttttagc |
150560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 148903 - 149007
Alignment:
| Q |
19 |
atttgtgtgtcaagtatttgattatatatgcaataaaatggagatatatttcctcttcaaatggacaggccccaaatatggtgtttgtttaatagagcag |
118 |
Q |
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||||||| | |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
148903 |
atttgtgcgccaagtatt-gattatatacgcaataaaatggagatatatttcctcttcaaatggacaggccccaaatatggtgtttgtttaatacagcag |
149001 |
T |
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| Q |
119 |
aagcat |
124 |
Q |
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| T |
149002 |
aagcat |
149007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 213 - 295
Target Start/End: Original strand, 26180785 - 26180865
Alignment:
| Q |
213 |
acttgaaacttcaattgaccaggacccctataaatatgaggtatgttattttaacatcaaaatacatgcaatgtatgtgttta |
295 |
Q |
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| T |
26180785 |
acttgaaacttcaattgacaaggacgcctataaatatgagct--gttattttaacatcaaaatacaagcaatgtatgtgttta |
26180865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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