View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12253_low_2 (Length: 653)
Name: NF12253_low_2
Description: NF12253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12253_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 19 - 643
Target Start/End: Complemental strand, 39166730 - 39166106
Alignment:
| Q |
19 |
atataccacatgtttcactatatcttgtgccacaatgtcttcgcaattgaaatataatggtcttctctttaatctttttaaatttattagtcatttgcac |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39166730 |
atataccacatgtttcactatatcttgtgccacaatgtctttgcaattgaaatataatggtcttctctttaatctttttaaatttattagtcatttgcac |
39166631 |
T |
|
| Q |
119 |
atttgctaataatggccaagtatgacatcagatggcatatgaactgcatggtttattggctggaaatgtcagcattgtcactggtgaaaatatcaagcct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39166630 |
atttgctaataatggccaagtatgacatcagatggcatatgaactgcatggtttattggctggaaatgtcagcattgtcactggtgaaaatatcaagcct |
39166531 |
T |
|
| Q |
219 |
tcttatggtggagatgacgaggcattcctacgaaaggttatcacacccctataccgagtaattgagaaggtgtgattttatctcacatggacattgttgt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39166530 |
tcttatggtggagatgacgaggcattcctacgaaaggttatcacacccatataccgagtaattgagaaggtgtgattttatttcacatggacattgttgt |
39166431 |
T |
|
| Q |
319 |
aatatctcaggtgcctatgttccctgtaatgatttgcaaaattgtaataaccatgttgatcattccaggaatctaagaaaagcagaaatggaaaggctgc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
39166430 |
aatatctcaggtgcctatgttccctgtaatgatttgcaaaattgtaataaccatgttgatcattccaggaatctaagaaaagcagaaatggaaaggcttc |
39166331 |
T |
|
| Q |
419 |
acactcagcatggtccaactatgatgatctaaatgagtatttttggtttgttttccttcagaattttattgctaaaattgacttggttcgtttcatttcg |
518 |
Q |
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| T |
39166330 |
acactcagcatggtccaactatgatgatctaaatgagtatttttggtttgttttccttcagaattttattgctaaaattgacttggttcgtttcatttcg |
39166231 |
T |
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| Q |
519 |
tcattcattacttgacnnnnnnnnnnnnnnnnnnnnnnnncaggtcacttgattgcttttctcttggatggcctatgcgtgatgatggtgannnnnnnaa |
618 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
39166230 |
tcattcattacttgactgttttttgttgttgttgttgttgcaggtcacttgattgcttttctcttggatggcctatgcgtgatgatggtgatttttttaa |
39166131 |
T |
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| Q |
619 |
atccacaagtgatttgacacaggtt |
643 |
Q |
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||||||||||||||||||||||||| |
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| T |
39166130 |
atccacaagtgatttgacacaggtt |
39166106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 114; Significance: 2e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 401 - 643
Target Start/End: Complemental strand, 5539224 - 5538982
Alignment:
| Q |
401 |
cagaaatggaaaggctgcacactcagcatggtccaactatgatgatctaaatgagtatttttggtttgttttccttcagaattttattgctaaaattgac |
500 |
Q |
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|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5539224 |
cagaaatggaaaggcttcacactcagcatggtgcaactatgatgatctaaatgagtatttttggtttgttttccttcagaattttattactaaaattgac |
5539125 |
T |
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| Q |
501 |
ttggttcgtttcatttcgtcattcattacttgacnnnnnnnnnnnnnnnnnnnnnnnncaggtcacttgattgcttttctcttggatggcctatgcgtga |
600 |
Q |
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|||||| |||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
5539124 |
ttggtttgtttcatttcatcatgcattacttgactgttttttgttgttgttgttgttgcaggtcacttgattgcttttctcttggatggcctataggtga |
5539025 |
T |
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| Q |
601 |
tgatggtgannnnnnnaaatccacaagtgatttgacacaggtt |
643 |
Q |
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|||||| || ||||||||||||||||||||||||||| |
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| T |
5539024 |
tgatggagatttttttaaatccacaagtgatttgacacaggtt |
5538982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 146 - 259
Target Start/End: Complemental strand, 43964103 - 43963990
Alignment:
| Q |
146 |
tcagatggcatatgaactgcatggtttattggctggaaatgtcagcattgtcactggtgaaaatatcaagccttcttatggtggagatgacgaggcattc |
245 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||| |
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| T |
43964103 |
tcagatggcatatgaacttcatggtttattggctggaaatgtcagcattgttactggtgaaaatatcaaaccttcttatggtggtgatgatgaggcattc |
43964004 |
T |
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| Q |
246 |
ctacgaaaggttat |
259 |
Q |
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| || |||||||| |
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| T |
43964003 |
ttgcgcaaggttat |
43963990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 384 - 471
Target Start/End: Complemental strand, 43963868 - 43963781
Alignment:
| Q |
384 |
caggaatctaagaaaagcagaaatggaaaggctgcacactcagcatggtccaactatgatgatctaaatgagtatttttggtttgttt |
471 |
Q |
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|||||| || |||||||||||||||||| |||| | |||||||| |||| ||| || |||||||||||||||||||| ||||| |||| |
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| T |
43963868 |
caggaagctgagaaaagcagaaatggaatggctcctcactcagcctggtgcaattacgatgatctaaatgagtatttctggttagttt |
43963781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 559 - 609
Target Start/End: Complemental strand, 43963681 - 43963631
Alignment:
| Q |
559 |
caggtcacttgattgcttttctcttggatggcctatgcgtgatgatggtga |
609 |
Q |
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|||| ||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43963681 |
caggacacctgattgcttttctcttggatggcccatgcgtgatgatggtga |
43963631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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