View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12253_low_3 (Length: 533)
Name: NF12253_low_3
Description: NF12253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12253_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 326
Target Start/End: Original strand, 33963678 - 33963984
Alignment:
| Q |
16 |
tgtgtaaaagtatttagaaatggcgctcacgaaattcaataacttccctacaattggatctaacaataaaataaggaaagggtatggacatgtttttgca |
115 |
Q |
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| T |
33963678 |
tgtgtaaaagtatttagaaatggcgctcacgaaattcaataacttccctacaattggatctaacaataaaataaggaaagggtatggacatgtttttgca |
33963777 |
T |
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| Q |
116 |
cagggatattggtcttaaatccttcatagatgtcagattctaaccttcagtatcaacactatgttagtttcattc-aaatgcagtgttgcttgatccaat |
214 |
Q |
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| T |
33963778 |
cagggatattggtcttaaatccttcatagatgtcagattctaaccttcagtatcaaaactatgttggtttcattcaaaatgcagtgttgcttgatccaat |
33963877 |
T |
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| Q |
215 |
taatttgtcggagcctgaagctgtatctgcatgcatgctaaacaaggcctgtcgaaattcattagcttggaat---tcacttgtaagaaggttatcgtgt |
311 |
Q |
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| T |
33963878 |
taatttgtcggggcctgaagctgtat--------atgctaaacaaggcctgtcgaaattcattagcttggaattgatcacttgtaagaaggttattgtgt |
33963969 |
T |
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| Q |
312 |
tccggagtcacacgt |
326 |
Q |
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| T |
33963970 |
tccggagtcgcacgt |
33963984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 427 - 514
Target Start/End: Original strand, 33963985 - 33964072
Alignment:
| Q |
427 |
tatataagaacatagaggctaatcaaatcaggaaaaataattcagatataagacaattcttgtttaggactagcctttttgtgttcat |
514 |
Q |
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| T |
33963985 |
tatataagaacatagaggctaatcaaataaggaaaaataaatcagatataagacaattcttgtttaggactagcctttttgtgttcat |
33964072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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