View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12253_low_4 (Length: 373)

Name: NF12253_low_4
Description: NF12253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12253_low_4
NF12253_low_4
[»] chr7 (2 HSPs)
chr7 (17-364)||(12357982-12358329)
chr7 (65-110)||(5636919-5636964)
[»] chr3 (4 HSPs)
chr3 (27-272)||(23907487-23907733)
chr3 (18-110)||(21828560-21828653)
chr3 (252-338)||(33578658-33578744)
chr3 (249-285)||(21654579-21654615)
[»] scaffold1587 (1 HSPs)
scaffold1587 (19-222)||(1137-1341)
[»] chr4 (13 HSPs)
chr4 (76-305)||(25366939-25367168)
chr4 (19-354)||(17331761-17332099)
chr4 (19-110)||(10577121-10577214)
chr4 (250-305)||(24912481-24912535)
chr4 (65-110)||(39134147-39134192)
chr4 (65-129)||(34667404-34667468)
chr4 (197-254)||(32022560-32022617)
chr4 (66-110)||(4733413-4733457)
chr4 (249-301)||(13273659-13273711)
chr4 (65-109)||(33519741-33519785)
chr4 (20-110)||(32022421-32022512)
chr4 (65-111)||(26160453-26160499)
chr4 (69-110)||(31859254-31859295)
[»] chr8 (5 HSPs)
chr8 (54-110)||(23876639-23876695)
chr8 (65-111)||(12774222-12774268)
chr8 (65-110)||(5154482-5154527)
chr8 (27-110)||(28259902-28259987)
chr8 (54-110)||(6887565-6887621)
[»] chr6 (6 HSPs)
chr6 (54-110)||(26499215-26499271)
chr6 (65-110)||(10976426-10976471)
chr6 (65-110)||(32929827-32929872)
chr6 (65-110)||(16174711-16174756)
chr6 (65-109)||(9395954-9395998)
chr6 (22-106)||(13123584-13123671)
[»] chr5 (4 HSPs)
chr5 (203-299)||(19443621-19443717)
chr5 (54-110)||(30791309-30791365)
chr5 (54-110)||(30803280-30803335)
chr5 (65-109)||(7742244-7742288)
[»] chr1 (6 HSPs)
chr1 (65-110)||(31314255-31314300)
chr1 (249-285)||(15416234-15416270)
chr1 (249-284)||(25964544-25964579)
chr1 (249-282)||(18396338-18396371)
chr1 (65-110)||(23421018-23421063)
chr1 (24-130)||(13807158-13807266)
[»] chr2 (3 HSPs)
chr2 (268-341)||(15453648-15453721)
chr2 (250-282)||(14962924-14962956)
chr2 (22-93)||(15453880-15453952)
[»] scaffold0190 (1 HSPs)
scaffold0190 (53-109)||(11027-11083)


Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 17 - 364
Target Start/End: Complemental strand, 12358329 - 12357982
Alignment:
Q  17 caggttccatgatgaacctctacttatttgctgatataattaatagagtttttattcaatttatgattcaagtgtctgatataatttgtatatgctacat 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  12358329 caggttccatgatgaacctctacttatttgctgatataattaatagagtttttattcaatttatgattcaagtgtctgatttaatttgcatatgctacat 12358230  T
Q  117 tcttaatgcttttcgattagaggttgaccttgtctctcggctaaggtataggattgactatcatgacggtgtccaaaaaagaacagtagtaaattcctca 216  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12358229 tcttaatgcttttcgattagaggttaaccttgtctctcggctaaggtataggattgactatcatgccggtgtccaaaaaagaacagtagtaaattcctca 12358130  T
Q  217 ttttaatgtaatctcttttaatttaaatacatgtatgattgttagggttatgattcatctttagggaaacgtcccaagtatagcctttggtgcagcaaaa 316  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12358129 ttttaaagtaatctcttttaatttaaatacatgtatgattgttagggttatgattcatctttagggaaacgtcccaagtatagcctttggtgcagcaaaa 12358030  T
Q  317 atacacaaacttcccatcgttacattatggggtcatgttcttctctct 364  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  12358029 atacacaaacttcccatcgttacatcatggggtcatgttctactctct 12357982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 5636919 - 5636964
Alignment:
Q  65 tttttattcaatttatgattcaagtgtctgatataatttgtatatg 110  Q
    |||||||||| ||||||||||||||||| ||| |||||| ||||||    
T  5636919 tttttattcagtttatgattcaagtgtcagatttaatttatatatg 5636964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 27 - 272
Target Start/End: Complemental strand, 23907733 - 23907487
Alignment:
Q  27 gatgaacctctacttatttgctg-atataattaatagagtttttattcaatttatgattcaagtgtctgatataatttgtatatgctacattcttaatgc 125  Q
    ||||||| |||||||||||| || || ||||||||| ||||| |||| ||||||||||||||||||||||| ||||||||||| | | |||||||||||     
T  23907733 gatgaacttctacttatttgttggatttaattaataaagtttgtatttaatttatgattcaagtgtctgatttaatttgtataagttccattcttaatgt 23907634  T
Q  126 ttttcgattagaggttgaccttgtctctcggctaaggtataggattgactatcatgacggtgtccaaaaaagaacagtagtaaattcctcattttaatgt 225  Q
    ||||| | ||  |||| ||||  ||| | ||||||||| ||  | |||||||| |   |||| || || |||||| ||| |||||| || |||||||  |    
T  23907633 ttttcaactaacggttaacctgatctataggctaaggtttattactgactatccttttggtgcccgaataagaacggtaataaatttcttattttaaatt 23907534  T
Q  226 aatctcttttaatttaaatacatgtatgattgttagggttatgattc 272  Q
    |||||||||||| ||||||| | |||| | ||||| |||||||||||    
T  23907533 aatctcttttaaattaaatataagtataactgttaaggttatgattc 23907487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 21828653 - 21828560
Alignment:
Q  18 aggttccatgatgaacctctacttatttgctg-atataattaatagagtttttattcaatttatgattcaagtgtctgatataatttgtatatg 110  Q
    |||||||||||||||||||| |||||||   | ||  ||||||||   |||||||||| ||||||||||||||||||||| |||||||||||||    
T  21828653 aggttccatgatgaacctcttcttatttttgggattcaattaataatttttttattcagtttatgattcaagtgtctgatttaatttgtatatg 21828560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 338
Target Start/End: Original strand, 33578658 - 33578744
Alignment:
Q  252 tgattgttagggttatgattcatctttagggaaacgtcccaagtatagcctttggtgcagcaaaaatacacaaacttcccatcgtta 338  Q
    |||||||||| |||||||||||||||||||  ||| || |||||||||||||||   | ||| |||||| ||||||||||| |||||    
T  33578658 tgattgttagagttatgattcatctttaggagaacatcacaagtatagcctttgtcacggcacaaatactcaaacttcccaccgtta 33578744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 21654579 - 21654615
Alignment:
Q  249 gtatgattgttagggttatgattcatctttagggaaa 285  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  21654579 gtatgattgttagggttatgattcctctttcgggaaa 21654615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1587 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold1587
Description:

Target: scaffold1587; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 1341 - 1137
Alignment:
Q  19 ggttccatgatgaacctctacttatttgct-gatataattaatagagtttttattcaatttatgattcaagtgtctgatataatttgtatatgctacatt 117  Q
    ||||||| ||||||||| |||||||||| | |||  ||||||||   ||||||||||  ||||||||||| ||||| || ||||||||||||| || | |    
T  1341 ggttccacgatgaacctatacttatttgttagattcaattaataatttttttattcatattatgattcaaatgtcttatttaatttgtatatgttatact 1242  T
Q  118 cttaatgcttttcgattagaggttgaccttgtctctcggctaaggtataggattgactatcatgacggtgtccaaaaaagaacagtagtaaattcctcat 217  Q
     |||||||||||| | ||| |||||||||  ||||| |||||||||||| || |||||||| || ||||| | ||| | ||||| ||||||||| || ||    
T  1241 tttaatgcttttcaactagcggttgacctactctctaggctaaggtatatgactgactatcttgccggtgcctaaacatgaacaatagtaaattgcttat 1142  T
Q  218 tttaa 222  Q
    |||||    
T  1141 tttaa 1137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 76 - 305
Target Start/End: Original strand, 25366939 - 25367168
Alignment:
Q  76 tttatgattcaagtgtctgatataatttgtatatgctacattcttaatgcttttcgattagaggttgaccttgtctctcggctaaggtataggattgact 175  Q
    |||||||||||| ||| |||| ||||||||||||| | |||||| |||| ||||| || || |||| ||||  ||| | || ||||||||| || |||||    
T  25366939 tttatgattcaattgtttgatttaatttgtatatgtttcattctcaatgtttttcaatgagtggttaacctgatctataggttaaggtatatgactgact 25367038  T
Q  176 atcatgacggtgtccaaaaaagaacagtagtaaattcctcattt--taatgtaatctcttttaatttaaatacatgtatgattgttagggttatgattca 273  Q
    ||| ||  |||| ||||| |||||  |||||||||| || ||||  |||  |||| |||||||| || ||||   |||||||||||||| ||||||||||    
T  25367039 atcttgttggtgcccaaacaagaatggtagtaaattacttattttctaaattaatttcttttaa-ttgaatatgagtatgattgttaggtttatgattca 25367137  T
Q  274 tctttagggaaacgtcccaagtatagcctttg 305  Q
    ||||| ||| || ||  |||||||||||||||    
T  25367138 tcttttggggaa-gttgcaagtatagcctttg 25367168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 354
Target Start/End: Complemental strand, 17332099 - 17331761
Alignment:
Q  19 ggttccatgatgaacctctacttatttgctg-atataattaatagagtttt-tattcaatttatgattcaagtgtctgatataatttgtatatgctacat 116  Q
    |||||||||||||||||||||||||||  || ||  |||| ||| |||||| |||| | |||||||||||| || || || |||||| |||||| | |||    
T  17332099 ggttccatgatgaacctctacttatttcttggattcaattcataaagttttgtatttagtttatgattcaattgcctaatttaatttttatatgttccat 17332000  T
Q  117 tcttaatgcttttcgattagaggttgaccttgtctctcggctaaggtataggattgactatcatgacggtgtccaaaaaagaacagtagtaaattcctca 216  Q
     || |||||||||| | |||  ||||||||  ||| | |||||||||||| || | ||||||||| ||||| |  ||  |||| || ||||| || || |    
T  17331999 gctcaatgcttttcaactagcagttgacctgatctataggctaaggtataagacttactatcatgtcggtgcctgaaccagaatagcagtaacttgctta 17331900  T
Q  217 tttta--atgtaatctcttttaatttaaatacatgtatgattgttagggttatgattcatctttagggaaacgtcccaagtatagcctttggtgcagcaa 314  Q
    |||||  |  ||||||  ||||||  |  || |  |||||||||||  | |||||||||| ||||||| |||||| |||||||| ||||||  || |||     
T  17331899 ttttataaattaatcttgtttaatcgat-tataaatatgattgttatagctatgattcatttttaggggaacgtcgcaagtataacctttgtcgcggcac 17331801  T
Q  315 aaatacacaaacttcccatcgttacattatggggtcatgt 354  Q
    |||||| | ||||||||| |||||||| | ||||||||||    
T  17331800 aaatactcgaacttcccaccgttacatcacggggtcatgt 17331761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 10577121 - 10577214
Alignment:
Q  19 ggttccatgatgaacctctacttatttgct-gatataattaatagag-tttttattcaatttatgattcaagtgtctgatataatttgtatatg 110  Q
    ||||||||||||||||||| |||||||| | |||  |||| ||  || |||||||||| ||||||||||||||||||||| |||||||||||||    
T  10577121 ggttccatgatgaacctcttcttatttgttggattcaatttatgaagttttttattcagtttatgattcaagtgtctgatttaatttgtatatg 10577214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 250 - 305
Target Start/End: Complemental strand, 24912535 - 24912481
Alignment:
Q  250 tatgattgttagggttatgattcatctttagggaaacgtcccaagtatagcctttg 305  Q
    ||||||||||||||||||||||||||||||||| || ||| |||||||||||||||    
T  24912535 tatgattgttagggttatgattcatctttaggggaa-gtcgcaagtatagcctttg 24912481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 39134192 - 39134147
Alignment:
Q  65 tttttattcaatttatgattcaagtgtctgatataatttgtatatg 110  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||    
T  39134192 tttttattcaatttatgattcaagtgtttgatttaatttgtatatg 39134147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 34667404 - 34667468
Alignment:
Q  65 tttttattcaatttatgattcaagtgtctgatataatttgtatatgctacattcttaatgctttt 129  Q
    |||||||||| ||||| ||||||||||||||| ||||||||||||| |   ||||||||||||||    
T  34667404 tttttattcagtttataattcaagtgtctgatttaatttgtatatgttcagttcttaatgctttt 34667468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 32022560 - 32022617
Alignment:
Q  197 gaacagtagtaaattcctcattttaatgtaatctcttttaatttaaatacatgtatga 254  Q
    ||||||||||||||| || |||||||  ||||||||||||| ||||||||| ||||||    
T  32022560 gaacagtagtaaattgcttattttaaattaatctcttttaaattaaatacaagtatga 32022617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 4733413 - 4733457
Alignment:
Q  66 ttttattcaatttatgattcaagtgtctgatataatttgtatatg 110  Q
    |||||||||||||||||||||| | |||||| |||||||||||||    
T  4733413 ttttattcaatttatgattcaactatctgatttaatttgtatatg 4733457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 301
Target Start/End: Complemental strand, 13273711 - 13273659
Alignment:
Q  249 gtatgattgttagggttatgattcatctttagggaaacgtcccaagtatagcc 301  Q
    ||||||||||| |||||||| ||||||||||||| |||||  |||||||||||    
T  13273711 gtatgattgtttgggttatggttcatctttaggggaacgttgcaagtatagcc 13273659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 33519741 - 33519785
Alignment:
Q  65 tttttattcaatttatgattcaagtgtctgatataatttgtatat 109  Q
    |||||||||| |||||||||||||||| |||| ||||||||||||    
T  33519741 tttttattcagtttatgattcaagtgtttgatttaatttgtatat 33519785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 32022421 - 32022512
Alignment:
Q  20 gttccatgatgaacctctacttatttgctg-atataattaatagagtttttattcaatttatgattcaagtgtctgatataatttgtatatg 110  Q
    |||||| |||||||||  |||| ||||||| ||  |||||||| |||||||||||| ||||| | ||||| |||| || |||||||||||||    
T  32022421 gttccacgatgaaccttcacttctttgctggattcaattaataaagtttttattcagtttataaatcaagcgtcttatttaatttgtatatg 32022512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 111
Target Start/End: Original strand, 26160453 - 26160499
Alignment:
Q  65 tttttattcaatttatgattcaagtgtctgatataatttgtatatgc 111  Q
    |||||||| | ||||||||||||||||||||| |||||| |||||||    
T  26160453 tttttatttagtttatgattcaagtgtctgatttaatttatatatgc 26160499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 31859295 - 31859254
Alignment:
Q  69 tattcaatttatgattcaagtgtctgatataatttgtatatg 110  Q
    |||||| |||| |||||||||||||||| |||||||||||||    
T  31859295 tattcagtttacgattcaagtgtctgatttaatttgtatatg 31859254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 23876639 - 23876695
Alignment:
Q  54 aattaatagagtttttattcaatttatgattcaagtgtctgatataatttgtatatg 110  Q
    |||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||    
T  23876639 aattaataaagtttttattcaatttataattcaagtgtctgatttaatttgtatatg 23876695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 111
Target Start/End: Complemental strand, 12774268 - 12774222
Alignment:
Q  65 tttttattcaatttatgattcaagtgtctgatataatttgtatatgc 111  Q
    |||||||||| ||||| ||||||||||||||| ||||||||||||||    
T  12774268 tttttattcagtttataattcaagtgtctgatttaatttgtatatgc 12774222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 5154482 - 5154527
Alignment:
Q  65 tttttattcaatttatgattcaagtgtctgatataatttgtatatg 110  Q
    ||||||||||||||||||||||||||| |||| ||||| |||||||    
T  5154482 tttttattcaatttatgattcaagtgtgtgatttaattagtatatg 5154527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 28259987 - 28259902
Alignment:
Q  27 gatgaacctctacttatttgct-gatataattaatagagttttt-attcaatttatgattcaagtgtctgatataatttgtatatg 110  Q
    ||||||||||| |||||||| | |||  |||||||| ||||||| |||||||||| ||||||||||||  || |||||||||||||    
T  28259987 gatgaacctcttcttatttgatagattcaattaataaagttttttattcaatttaagattcaagtgtcaaatttaatttgtatatg 28259902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 110
Target Start/End: Complemental strand, 6887621 - 6887565
Alignment:
Q  54 aattaatagagtttttattcaatttatgattcaagtgtctgatataatttgtatatg 110  Q
    |||||||| | | |||||||| |||||||| |||||||||||| |||||||||||||    
T  6887621 aattaataaattgtttattcagtttatgatccaagtgtctgatttaatttgtatatg 6887565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 54 - 110
Target Start/End: Complemental strand, 26499271 - 26499215
Alignment:
Q  54 aattaatagagtttttattcaatttatgattcaagtgtctgatataatttgtatatg 110  Q
    |||||||| ||||||||| |||||||||||||||||||||| | |||||||||||||    
T  26499271 aattaataaagtttttatacaatttatgattcaagtgtctggtttaatttgtatatg 26499215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 10976471 - 10976426
Alignment:
Q  65 tttttattcaatttatgattcaagtgtctgatataatttgtatatg 110  Q
    ||||||| || ||||||||||||||||||||| |||||||||||||    
T  10976471 tttttatccagtttatgattcaagtgtctgatttaatttgtatatg 10976426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 32929872 - 32929827
Alignment:
Q  65 tttttattcaatttatgattcaagtgtctgatataatttgtatatg 110  Q
    |||||||| | ||||||||||||||||||||| |||||||||||||    
T  32929872 tttttatttagtttatgattcaagtgtctgatttaatttgtatatg 32929827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 16174756 - 16174711
Alignment:
Q  65 tttttattcaatttatgattcaagtgtctgatataatttgtatatg 110  Q
    |||||||||| ||||||||||||||||| ||| |||||| ||||||    
T  16174756 tttttattcagtttatgattcaagtgtcggatttaatttctatatg 16174711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 9395998 - 9395954
Alignment:
Q  65 tttttattcaatttatgattcaagtgtctgatataatttgtatat 109  Q
    |||||||||||||||||||||||   |||||| ||||||||||||    
T  9395998 tttttattcaatttatgattcaaacatctgatttaatttgtatat 9395954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 13123584 - 13123671
Alignment:
Q  22 tccatgatgaacctctacttatttgct-gatataattaatagagtttt--tattcaatttatgattcaagtgtctgatataatttgta 106  Q
    ||||||||||||||||| ||||||  | |||  |||||||||  ||||  |||||| ||||||||||||||||||| | |||||||||    
T  13123584 tccatgatgaacctctagttatttattggattcaattaatagtttttttatattcagtttatgattcaagtgtctgctttaatttgta 13123671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 203 - 299
Target Start/End: Complemental strand, 19443717 - 19443621
Alignment:
Q  203 tagtaaattcctcattttaatgtaatctcttttaatttaaatacatgtatgattgttagggttatgattcatctttagggaaacgtcccaagtatag 299  Q
    ||||||||| || |||||||  ||||||||||||| ||||| | |  |||||||||||  |||||||||||||||||  ||||| || |||||||||    
T  19443717 tagtaaattgcttattttaaattaatctcttttaaattaaacataaatatgattgttaaagttatgattcatctttaaagaaacatcgcaagtatag 19443621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 30791309 - 30791365
Alignment:
Q  54 aattaatagagtttttattcaatttatgattcaagtgtctgatataatttgtatatg 110  Q
    |||||||| |||||||||||| ||||||||| |||||| |||| |||||||||||||    
T  30791309 aattaataaagtttttattcagtttatgatttaagtgtttgatttaatttgtatatg 30791365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 30803280 - 30803335
Alignment:
Q  54 aattaatagagtttttattcaatttatgattcaagtgtctgatataatttgtatatg 110  Q
    |||||||| | ||||||||||||||||||||||||| ||| || |||||||||||||    
T  30803280 aattaatacattttttattcaatttatgattcaagtatct-atttaatttgtatatg 30803335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 7742288 - 7742244
Alignment:
Q  65 tttttattcaatttatgattcaagtgtctgatataatttgtatat 109  Q
    |||||||||| |||||||||| | |||||||| ||||||||||||    
T  7742288 tttttattcagtttatgattcgaatgtctgatttaatttgtatat 7742244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 31314255 - 31314300
Alignment:
Q  65 tttttattcaatttatgattcaagtgtctgatataatttgtatatg 110  Q
    |||||||||||| ||||||| ||||||||||| |||||||||||||    
T  31314255 tttttattcaatgtatgatttaagtgtctgatttaatttgtatatg 31314300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 15416270 - 15416234
Alignment:
Q  249 gtatgattgttagggttatgattcatctttagggaaa 285  Q
    ||||||||||||||||||||||||||||||| |||||    
T  15416270 gtatgattgttagggttatgattcatctttaaggaaa 15416234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 249 - 284
Target Start/End: Complemental strand, 25964579 - 25964544
Alignment:
Q  249 gtatgattgttagggttatgattcatctttagggaa 284  Q
    |||||||||||||| |||||||||||||||||||||    
T  25964579 gtatgattgttaggattatgattcatctttagggaa 25964544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 282
Target Start/End: Original strand, 18396338 - 18396371
Alignment:
Q  249 gtatgattgttagggttatgattcatctttaggg 282  Q
    ||||||||| ||||||||||||||||||||||||    
T  18396338 gtatgattgatagggttatgattcatctttaggg 18396371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 23421063 - 23421018
Alignment:
Q  65 tttttattcaatttatgattcaagtgtctgatataatttgtatatg 110  Q
    |||||||||| ||||||||||||||||| ||| | |||||||||||    
T  23421063 tttttattcagtttatgattcaagtgtcagatttgatttgtatatg 23421018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 130
Target Start/End: Complemental strand, 13807266 - 13807158
Alignment:
Q  24 catgatgaacctctacttatttgctg-atataattaatagagtttttattcaatttatgattcaagtgtc-tgatataatttgtatatgctacattctta 121  Q
    |||||||||||| |||||||||  || ||  |||||||| ||||| |||| | |||||||||||| |  | |||| ||||||||||||| ||  ||||||    
T  13807266 catgatgaacctgtacttatttattggattcaattaataaagtttctatttagtttatgattcaattcccatgatttaatttgtatatgatatgttctta 13807167  T
Q  122 atgcttttc 130  Q
    |||||||||    
T  13807166 atgcttttc 13807158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 341
Target Start/End: Complemental strand, 15453721 - 15453648
Alignment:
Q  268 gattcatctttagggaaacgtcccaagtatagcctttggtgcagcaaaaatacacaaacttcccatcgttacat 341  Q
    ||||||||||||||| |||||| ||||||||| |||||  |||||| ||||||   ||||||||  ||||||||    
T  15453721 gattcatctttaggggaacgtcgcaagtatagtctttgtcgcagcacaaatacttgaacttcccgccgttacat 15453648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 282
Target Start/End: Complemental strand, 14962956 - 14962924
Alignment:
Q  250 tatgattgttagggttatgattcatctttaggg 282  Q
    |||||||||||| ||||||||||||||||||||    
T  14962956 tatgattgttagtgttatgattcatctttaggg 14962924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 15453952 - 15453880
Alignment:
Q  22 tccatgatgaacctctacttatttgctg-atataattaatagagtttttattcaatttatgattcaagtgtct 93  Q
    |||| |||||||||||| ||||||| || ||  || ||||| |||||||||| |||||||||||||| |||||    
T  15453952 tccacgatgaacctctatttatttgatggattcaactaataaagtttttattgaatttatgattcaattgtct 15453880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 109
Target Start/End: Complemental strand, 11083 - 11027
Alignment:
Q  53 taattaatagagtttttattcaatttatgattcaagtgtctgatataatttgtatat 109  Q
    ||||||||  |||||||||||| |||||||||| |  ||||||| ||||||||||||    
T  11083 taattaatcaagtttttattcagtttatgattctatagtctgatttaatttgtatat 11027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University