View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12254_high_10 (Length: 228)

Name: NF12254_high_10
Description: NF12254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12254_high_10
NF12254_high_10
[»] chr5 (13 HSPs)
chr5 (1-209)||(37429497-37429705)
chr5 (1-199)||(37824651-37824849)
chr5 (63-199)||(37697605-37697741)
chr5 (1-199)||(37533856-37534054)
chr5 (63-199)||(37400018-37400154)
chr5 (1-199)||(37712380-37712578)
chr5 (1-199)||(37640628-37640826)
chr5 (1-199)||(37436463-37436661)
chr5 (1-154)||(37392209-37392362)
chr5 (1-180)||(37703424-37703603)
chr5 (63-199)||(37595142-37595278)
chr5 (81-169)||(37412512-37412600)
chr5 (70-157)||(37381583-37381670)
[»] chr3 (1 HSPs)
chr3 (1-178)||(14553794-14553971)
[»] chr4 (2 HSPs)
chr4 (1-203)||(16842078-16842280)
chr4 (120-209)||(24216936-24217025)


Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 37429497 - 37429705
Alignment:
Q  1 tgaggttccacaaagatagaggaagaacaccatagaaattacagtttgaaaggcctaaatgtgtaagatacttcaaattgcctatggaatagggaatttc 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37429497 tgaggttccacaaagatagaggaagaacagcatagaaattacagtttgaaaggcctaaatgtgtaagatacttcaaattgcctatggaatagggaatttc 37429596  T
Q  101 atccgagaaggcagtgtatgagaggtccaagtaccttaggggagtgctccagttggacagtggaagtttcccactaaggtcctcattaaaagacaaatct 200  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37429597 atccgagaaggcggtgtatgagaggtccaagtaccttaggggagtgctccagttggacagtggaagtttcccactaaggtcctcattaaaagacaaatct 37429696  T
Q  201 agttcttga 209  Q
    |||||||||    
T  37429697 agttcttga 37429705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 37824651 - 37824849
Alignment:
Q  1 tgaggttccacaaagatagaggaagaacaccatagaaattacagtttgaaaggcctaaatgtgtaagatacttcaaattgcctatggaatagggaatttc 100  Q
    |||||||||||||||||||||||| ||  ||||  ||||| || | ||||||| |||| || |||||| ||||||| |  ||||||||||| ||||||||    
T  37824651 tgaggttccacaaagatagaggaacaatcccatcaaaattgcaatatgaaaggtctaattgagtaagagacttcaattgacctatggaataaggaatttc 37824750  T
Q  101 atccgagaaggcagtgtatgagaggtccaagtaccttaggggagtgctccagttggacagtggaagtttcccactaaggtcctcattaaaagacaaatc 199  Q
    | | || || |||| | | |||||||||||||||||||| ||||||||||||||||||  ||||||||  ||||||||||  | |||||| ||||||||    
T  37824751 acctgaaaaagcagaggaagagaggtccaagtaccttagaggagtgctccagttggactttggaagttgaccactaaggttatgattaaatgacaaatc 37824849  T

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Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 63 - 199
Target Start/End: Original strand, 37697605 - 37697741
Alignment:
Q  63 gtaagatacttcaaattgcctatggaatagggaatttcatccgagaaggcagtgtatgagaggtccaagtaccttaggggagtgctccagttggacagtg 162  Q
    |||||||||||||| |  ||||||||||| ||||||||| | ||||| |||||||| |||||||| ||||||||||| ||||||||||||||||||  ||    
T  37697605 gtaagatacttcaattgacctatggaataaggaatttcacctgagaaagcagtgtaagagaggtctaagtaccttagaggagtgctccagttggactttg 37697704  T
Q  163 gaagtttcccactaaggtcctcattaaaagacaaatc 199  Q
    ||||||  ||||||||||  | |||||| ||||||||    
T  37697705 gaagttgaccactaaggttttgattaaatgacaaatc 37697741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 37533856 - 37534054
Alignment:
Q  1 tgaggttccacaaagatagaggaagaacaccatagaaattacagtttgaaaggcctaaatgtgtaagatacttcaaattgcctatggaatagggaatttc 100  Q
    ||||||||||||||||||||||||  |  ||||  ||||| |||  ||||||| |||| || |||||| ||||||| |  ||||||||||| ||||||||    
T  37533856 tgaggttccacaaagatagaggaaccattccatcaaaattgcagaatgaaaggactaattgagtaagagacttcaattgacctatggaataaggaatttc 37533955  T
Q  101 atccgagaaggcagtgtatgagaggtccaagtaccttaggggagtgctccagttggacagtggaagtttcccactaaggtcctcattaaaagacaaatc 199  Q
    | | || || |||| | | |||||| ||||||||||||| ||||||||||||||||||  ||||||||  ||||||||||  |||||| | ||||||||    
T  37533956 acctgaaaaagcagagaaagagaggaccaagtaccttagaggagtgctccagttggactttggaagttgaccactaaggttatcattagatgacaaatc 37534054  T

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Target: chr5; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 63 - 199
Target Start/End: Complemental strand, 37400154 - 37400018
Alignment:
Q  63 gtaagatacttcaaattgcctatggaatagggaatttcatccgagaaggcagtgtatgagaggtccaagtaccttaggggagtgctccagttggacagtg 162  Q
    |||||||||||||| | |||||||||||||||||||||| | || || |||| | | |||||| ||||||||||||| ||||||||||||||||||  ||    
T  37400154 gtaagatacttcaattggcctatggaatagggaatttcacctgaaaaagcagaggaagagaggaccaagtaccttagaggagtgctccagttggactttg 37400055  T
Q  163 gaagtttcccactaaggtcctcattaaaagacaaatc 199  Q
    ||||||  ||||||||||  | |||||| ||||||||    
T  37400054 gaagttgaccactaaggttttgattaaatgacaaatc 37400018  T

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Target: chr5; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 37712380 - 37712578
Alignment:
Q  1 tgaggttccacaaagatagaggaagaacaccatagaaattacagtttgaaaggcctaaatgtgtaagatacttcaaattgcctatggaatagggaatttc 100  Q
    |||| |||||||||||||||||||  |  ||||  ||||| || | ||||||| |||| || |||||| ||||||| |  ||||||||||| ||||||||    
T  37712380 tgagattccacaaagatagaggaaccatcccatcaaaattgcaatgtgaaaggactaattgagtaagagacttcaattgacctatggaataaggaatttc 37712479  T
Q  101 atccgagaaggcagtgtatgagaggtccaagtaccttaggggagtgctccagttggacagtggaagtttcccactaaggtcctcattaaaagacaaatc 199  Q
    | | || || |||| | | |||||| ||||||||||||| ||||||||||||||||||  ||||||||  ||||||||||  | |||||| ||||||||    
T  37712480 acctgaaaaagcagaggaagagaggaccaagtaccttagaggagtgctccagttggactttggaagttgaccactaaggttttgattaaatgacaaatc 37712578  T

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Target: chr5; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 37640628 - 37640826
Alignment:
Q  1 tgaggttccacaaagatagaggaagaacaccatagaaattacagtttgaaaggcctaaatgtgtaagatacttcaaattgcctatggaatagggaatttc 100  Q
    ||||||||||||||||||||||||  |  ||||  ||||| || | ||||||| |||| || |||||| ||||||| |  ||||||||||| ||||||||    
T  37640628 tgaggttccacaaagatagaggaaccatcccatctaaattgcaatctgaaaggactaattgagtaagagacttcaattgacctatggaataaggaatttc 37640727  T
Q  101 atccgagaaggcagtgtatgagaggtccaagtaccttaggggagtgctccagttggacagtggaagtttcccactaaggtcctcattaaaagacaaatc 199  Q
    | | ||||| ||||   |   ||||| |||||||||||| ||||||||||||||||||  ||||||||  ||||||||||  | |||||| ||||||||    
T  37640728 acctgagaaagcagataaacggaggttcaagtaccttagaggagtgctccagttggactttggaagttgaccactaaggttttgattaaatgacaaatc 37640826  T

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Target: chr5; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 37436463 - 37436661
Alignment:
Q  1 tgaggttccacaaagatagaggaagaacaccatagaaattacagtttgaaaggcctaaatgtgtaagatacttcaaattgcctatggaatagggaatttc 100  Q
    ||||||||||||||||||||||||  |  ||||  ||||| ||   | ||||| |||| || |||||| ||||||| |  ||||||||||| ||||||||    
T  37436463 tgaggttccacaaagatagaggaaccatcccatcaaaattgcaacctaaaaggtctaattgagtaagagacttcaattgacctatggaataaggaatttc 37436562  T
Q  101 atccgagaaggcagtgtatgagaggtccaagtaccttaggggagtgctccagttggacagtggaagtttcccactaaggtcctcattaaaagacaaatc 199  Q
    | | ||||| ||||   |   ||||| |||||||||||| ||||||||||||||||||  ||||||||  ||||||||||  | |||||| ||||||||    
T  37436563 acctgagaaagcagataaacggaggttcaagtaccttagaggagtgctccagttggactttggaagttgaccactaaggttttgattaaatgacaaatc 37436661  T

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Target: chr5; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 37392362 - 37392209
Alignment:
Q  1 tgaggttccacaaagatagaggaagaacaccatagaaattacagtttgaaaggcctaaatgtgtaagatacttcaaattgcctatggaatagggaatttc 100  Q
    ||||||||||||||||||||||||  |  ||||  ||||| || | ||||||| |||| || |||||||||||||||| |||||| || | |||||||||    
T  37392362 tgaggttccacaaagatagaggaaccatcccatctaaattgcaatatgaaaggactaattgagtaagatacttcaaatggcctatagatttgggaatttc 37392263  T
Q  101 atccgagaaggcagtgtatgagaggtccaagtaccttaggggagtgctccagtt 154  Q
    | | ||||| |   ||   || ||||||||||||||||| ||||||||||||||    
T  37392262 acctgagaaagtgatgccagataggtccaagtaccttagaggagtgctccagtt 37392209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 37703424 - 37703603
Alignment:
Q  1 tgaggttccacaaagatagaggaagaacaccatagaaattacagtttgaaaggcctaaatgtgtaagatacttcaaattgcctatggaatagggaatttc 100  Q
    |||| |||||||||||||||||||  |  ||||  ||||| || | ||||||| |||| || |||||| ||||||| |  ||||||||||| ||||||||    
T  37703424 tgagattccacaaagatagaggaaccatcccatctaaattgcaatgtgaaaggtctaattgagtaagagacttcaattgacctatggaataaggaatttc 37703523  T
Q  101 atccgagaaggcagtgtatgagaggtccaagtaccttaggggagtgctccagttggacagtggaagtttcccactaaggt 180  Q
    | | || || |||| | | ||||||| |||||| ||||| |||| ||||||||||||   ||||||||  ||||||||||    
T  37703524 acctgaaaaagcagaggaagagaggttcaagtatcttagaggagagctccagttggattttggaagttgaccactaaggt 37703603  T

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Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 199
Target Start/End: Original strand, 37595142 - 37595278
Alignment:
Q  63 gtaagatacttcaaattgcctatggaatagggaatttcatccgagaaggcagtgtatgagaggtccaagtaccttaggggagtgctccagttggacagtg 162  Q
    |||||||||||||| |  ||||||||||| ||||||||| | || || ||||   |   ||||| |||||||||||| ||||||||| ||||||||  ||    
T  37595142 gtaagatacttcaattgacctatggaataaggaatttcacctgaaaaagcagataaacggaggttcaagtaccttagaggagtgctcaagttggactttg 37595241  T
Q  163 gaagtttcccactaaggtcctcattaaaagacaaatc 199  Q
    ||||||  ||||||||||  |||||||| ||||||||    
T  37595242 gaagttgaccactaaggttatcattaaatgacaaatc 37595278  T

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Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 81 - 169
Target Start/End: Complemental strand, 37412600 - 37412512
Alignment:
Q  81 cctatggaatagggaatttcatccgagaaggcagtgtatgagaggtccaagtaccttaggggagtgctccagttggacagtggaagttt 169  Q
    ||||||||||| ||||||||| | |||||   |||  | ||||| |||||||||||||| ||||||||||||||| ||| |||||||||    
T  37412600 cctatggaataaggaatttcacctgagaaaaaagttaaagagagatccaagtaccttagaggagtgctccagttgaacattggaagttt 37412512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 157
Target Start/End: Complemental strand, 37381670 - 37381583
Alignment:
Q  70 acttcaaattgcctatggaatagggaatttcatccgagaaggcagtgtatgagaggtccaagtaccttaggggagtgctccagttgga 157  Q
    ||||||| | |||||||||||| ||||||||| | ||||| |  |||   ||||||||||||||||| |  |||||||||||||||||    
T  37381670 acttcaactggcctatggaataaggaatttcacctgagaaaggggtgcgagagaggtccaagtacctcaaaggagtgctccagttgga 37381583  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 14553794 - 14553971
Alignment:
Q  1 tgaggttccacaaagatagaggaagaacaccatagaaattacagtttgaaaggcctaaatgtgtaagatacttcaaattgcctatggaatagggaatttc 100  Q
    ||||||||||||||||||||||||  |  ||||  ||||| || | ||||||| ||||||| |||||| ||||||| |  ||||||||||| ||||||||    
T  14553794 tgaggttccacaaagatagaggaaccatcccatctaaattgcaatctgaaaggactaaatgagtaagagacttcaattgacctatggaataaggaatttc 14553893  T
Q  101 atccgagaaggcagtgtatgagaggtccaagtaccttaggggagtgctccagttggacagtggaagtttcccactaag 178  Q
    | | ||||| |||| |||   ||||| |||||||||||| ||||| |||||||||||   ||||||||  ||||||||    
T  14553894 acctgagaaagcagagtaatggaggtacaagtaccttagaggagtactccagttggattttggaagttgaccactaag 14553971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 16842280 - 16842078
Alignment:
Q  1 tgaggttccacaaagatagaggaagaacaccatagaaattacagtttgaaaggcctaaatgtgtaagatacttcaaattgcctatggaatagggaatttc 100  Q
    ||||||||||||||||||||||||  |  ||||  ||||| ||   ||||||| ||||||| |||||| |||| || |  |||||||||||||  |||||    
T  16842280 tgaggttccacaaagatagaggaaccatcccatcaaaattgcaaaatgaaaggactaaatgagtaagagactttaattgacctatggaataggagatttc 16842181  T
Q  101 atccgagaaggcagtgtatgagaggtccaagtaccttaggggagtgctccagttggacagtggaagtttcccactaaggtcctcattaaaagacaaatct 200  Q
      | ||||| ||||| |  ||||||| |||||||||||| |||||||||||||||||   ||||||||  ||||||||||| | ||||   |||||||||    
T  16842180 tcctgagaaagcagtatgagagaggtacaagtaccttagaggagtgctccagttggattttggaagttgaccactaaggtcttgattatgtgacaaatct 16842081  T
Q  201 agt 203  Q
    |||    
T  16842080 agt 16842078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 209
Target Start/End: Complemental strand, 24217025 - 24216936
Alignment:
Q  120 gagaggtccaagtaccttaggggagtgctccagttggacagtggaagtttcccactaaggtcctcattaaaagacaaatctagttcttga 209  Q
    |||||||||||||||||||||||||||||||||||||||  ||||| ||| |||| |||||| | |||  | ||||||||||||| ||||    
T  24217025 gagaggtccaagtaccttaggggagtgctccagttggacgttggaaatttaccacgaaggtcttgattcgatgacaaatctagtttttga 24216936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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