View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12254_high_2 (Length: 556)
Name: NF12254_high_2
Description: NF12254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12254_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 204 - 539
Target Start/End: Complemental strand, 49254965 - 49254615
Alignment:
| Q |
204 |
ctgaagccagagacagcacaaagagagatagcaatagctgtgctagaaagagaaagtttacacaaatgaccaaccatcatcattgaaataatttgtagaa |
303 |
Q |
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||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
49254965 |
ctgaagccagagacaacacagagagagatagcaatagctgtgctagaaagagaaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaa |
49254866 |
T |
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| Q |
304 |
aatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacacgccatgttatgcttcttgaac---c |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
49254865 |
aatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgcttcttgaaccagc |
49254766 |
T |
|
| Q |
401 |
accctctgtgtctttctctaacaaacctttatccatattttctagcccagaaaattgaa-------------tacattaatattgggatttgaatacgtt |
487 |
Q |
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| T |
49254765 |
accctctctgtctttctctaacaaacctttttccatattttctagcccagaaaattgaatatgtgacaaagttacattaatatt-ggatttgaatacgtt |
49254667 |
T |
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| Q |
488 |
ggtggaagttgagattattattgaaattggaataaacaatgttcagttcaca |
539 |
Q |
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| T |
49254666 |
ggtggaagttgagattattattgaaattggaataaacaatgttcagttcaca |
49254615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 49256098 - 49255932
Alignment:
| Q |
1 |
ccattacaatacaactttcatacacgcaaagtcatctatgcgtaaaactaaacactagggaaagttataccatatggataaaacagaagtttcaagctgt |
100 |
Q |
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| T |
49256098 |
ccattacaatacaactttcatacacgcaaagtcatctatgcgtaaaactaaacactagggaaagttataccatatggataaaacagaagtttcaagctgt |
49255999 |
T |
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| Q |
101 |
ggatttggaagaagaccagaaagaaagactaggagctcaaatgaccaccactcaaagctgaaatgat |
167 |
Q |
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| T |
49255998 |
ggatttggaagaagaccagaaagaaagactaggagctcaaatgaccaccactcaaagctgaaatgat |
49255932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 204 - 446
Target Start/End: Complemental strand, 49267227 - 49266985
Alignment:
| Q |
204 |
ctgaagccagagacagcacaaagagagatagcaatagctgtgctagaaagagaaagtttacacaaatgaccaaccatcatcattgaaataatttgtagaa |
303 |
Q |
| |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||| |||| |||||||||| |||||||||||||||||||||| |
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| T |
49267227 |
ctgaagccagagacaccacagagagagatagcaatagctgtgctagaaagagcaagtttacccaaacgaccaaccattatcattgaaataatttgtagaa |
49267128 |
T |
|
| Q |
304 |
aatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacacgccatgttatgcttcttgaaccacc |
403 |
Q |
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|||||||||||| ||| || |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
49267127 |
aatattgtgacagagtgacggcgatcataggcagagctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgcttcttgaatcacc |
49267028 |
T |
|
| Q |
404 |
ctctgtgtctttctctaacaaacctttatccatattttctagc |
446 |
Q |
| |
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||| ||||||||||||||||||| || ||||||||||||||| |
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| T |
49267027 |
ttctctgtctttctctaacaaacccttttccatattttctagc |
49266985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 174 - 354
Target Start/End: Original strand, 49274577 - 49274761
Alignment:
| Q |
174 |
caaaagaagacttgcaagaacgctgaacggctgaagccagagacagcacaaagagagatagca----atagctgtgctagaaagagaaagtttacacaaa |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
49274577 |
caaaagaagacttgcaagaacgctgaacggctgaagccagagacagcacaaagagagatagcaagcaatagctgtgctagaaagagaaagtttacccaaa |
49274676 |
T |
|
| Q |
270 |
tgaccaaccatcatcattgaaataatttgtagaaaatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacat |
354 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||| |
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| T |
49274677 |
tgaccaaccatcatcattgaaataatttgtagaaaatattgtgacaaagttacactagtcataggcaaagctagaaaaccaacat |
49274761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 204 - 390
Target Start/End: Complemental strand, 49271633 - 49271447
Alignment:
| Q |
204 |
ctgaagccagagacagcacaaagagagatagcaatagctgtgctagaaagagaaagtttacacaaatgaccaaccatcatcattgaaataatttgtagaa |
303 |
Q |
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||||||||||||||| || | ||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
49271633 |
ctgaagccagagacaccatagagagagatagcaatagctgtggtagaaagagcaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaa |
49271534 |
T |
|
| Q |
304 |
aatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacacgccatgttatgc |
390 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||| ||| |||| ||||| ||||| |
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| T |
49271533 |
aatattgtgacaaagttacactaatcataggcaaagctagaaaaccaacatcttctacctcttgaacaaacacaccccatgatatgc |
49271447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 65 - 163
Target Start/End: Complemental strand, 49269004 - 49268906
Alignment:
| Q |
65 |
ttataccatatggataaaacagaagtttcaagctgtggatttggaagaagaccagaaagaaagactaggagctcaaatgaccaccactcaaagctgaaa |
163 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||| || |||||| ||||||||||||||||||| ||||||| |
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| T |
49269004 |
ttataccatatggataagactgaagtttcaagctgtggatttggtagaagaccagaaagaaggattaggagttcaaatgaccaccactcaaggctgaaa |
49268906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 164
Target Start/End: Complemental strand, 49273738 - 49273704
Alignment:
| Q |
130 |
taggagctcaaatgaccaccactcaaagctgaaat |
164 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
49273738 |
taggagctcaaatgaccaccactcaaagctgaaat |
49273704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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