View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12254_high_3 (Length: 409)
Name: NF12254_high_3
Description: NF12254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12254_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 171 - 378
Target Start/End: Original strand, 39406469 - 39406679
Alignment:
| Q |
171 |
taagctttatcttcatctcctcattctctcccaccttctgcaataaaagctccaaaaca---acaacaatgattaagatctagcttccttgaggatgaag |
267 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
39406469 |
taagttttatcttcatctcctcattctctcccaccttctgcaataaaacctccaaaacaacaacaacaatgattaaaatctagcttccttgaggatgaag |
39406568 |
T |
|
| Q |
268 |
atcccaaaacaacaacaactatgaagatgtcgtaatttcgaatgagcaaaacttcatcactgagatcgaaaataaccacttcgtggtggttacatcctac |
367 |
Q |
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|||||||||||||| |||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||| ||| |||||| ||||||| |
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| T |
39406569 |
gtcccaaaacaacaatgactatgaagatgtcacaatttcgaacgagcaaagcttcatcactgagatcgaaaataaccactttgtgatggttaaatcctac |
39406668 |
T |
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| Q |
368 |
gccctgatgct |
378 |
Q |
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||||||||||| |
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| T |
39406669 |
gccctgatgct |
39406679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 163 - 388
Target Start/End: Original strand, 50430704 - 50430932
Alignment:
| Q |
163 |
accacttataagctttatcttcatctcctcattctctcccaccttctgcaataaaagctccaaaacaacaacaatgattaagatctagcttccttgagga |
262 |
Q |
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||||||| |||| |||||||||| |||||||||||||| || || |||||||||| |||||||||||||||| ||||||||| ||||||| ||||||| |
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| T |
50430704 |
accacttttaagttttatcttcacttcctcattctctcctactttatgcaataaaacatccaaaacaacaacaacgattaagatttagcttctttgagga |
50430803 |
T |
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| Q |
263 |
tgaagatcccaaaacaacaacaactatgaagatgtcgtaatttcgaatgagc--aaaacttcatcactgagatcgaaaataaccacttcgtggtggttac |
360 |
Q |
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| T |
50430804 |
tcaagttcccaaaacaacaacgactatgaagatgtcgtaattttgaaggagcaaaaaacttcatcactgagatcgaaaataaccacttcgtgattgttaa |
50430903 |
T |
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| Q |
361 |
atcctac-gccctgatgctgttacagtaa |
388 |
Q |
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||||||| |||||||| ||| ||||||| |
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| T |
50430904 |
atcctacacccctgatgttgtcacagtaa |
50430932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 215 - 376
Target Start/End: Complemental strand, 21672584 - 21672423
Alignment:
| Q |
215 |
aaaagctccaaaacaacaacaatgattaagatctagcttccttgaggatgaagatcccaaaacaacaacaactatgaagatgtcgtaatttcgaatgagc |
314 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||| | ||||||||||| |||||||||||||||||| |
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| T |
21672584 |
aaaacctccaaaacaagaacaatgattaagatctagcttctttgaggttgaagatcccaaaacaacagcgactatgaagatatcgtaatttcgaatgagc |
21672485 |
T |
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| Q |
315 |
aaaacttcatcactgagatcgaaaataaccacttcgtggtggttacatcctacgccctgatg |
376 |
Q |
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| T |
21672484 |
aaaacttcatcactgagatcgaaaataaccacttcatgatggttaaatcttacgccatgatg |
21672423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 110
Target Start/End: Complemental strand, 21672637 - 21672580
Alignment:
| Q |
53 |
ggaaaatgatatttagtacggtactttaccatacgaatattcacggatgcctgaaaac |
110 |
Q |
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| T |
21672637 |
ggaaaatgatatttagtacaggaattttgcatacggatattcacggatgcctgaaaac |
21672580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 129
Target Start/End: Original strand, 9221983 - 9222061
Alignment:
| Q |
51 |
aaggaaaatgatatttagtacggtactttaccatacgaatattcacggatgcctgaaaacatgcaatttcaacgtgctg |
129 |
Q |
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| T |
9221983 |
aaggaaaatgatatttgttacgggagatttgcatacgaaaatttacggatgtttgaaaacatgcaatttcaacgtgctg |
9222061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 129
Target Start/End: Complemental strand, 58752 - 58674
Alignment:
| Q |
51 |
aaggaaaatgatatttagtacggtactttaccatacgaatattcacggatgcctgaaaacatgcaatttcaacgtgctg |
129 |
Q |
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|||||||||||||||| ||||| | || |||||||| ||||||||||| | |||||||||||||||||||||||| |
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| T |
58752 |
aaggaaaatgatatttgttacgggagatttgcatacgaaaattcacggatgtttaaaaacatgcaatttcaacgtgctg |
58674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 12596759 - 12596792
Alignment:
| Q |
19 |
ttttctttaagatatcgatgaaatattaaaataa |
52 |
Q |
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||||||||||||||||| |||||||||||||||| |
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| T |
12596759 |
ttttctttaagatatcggtgaaatattaaaataa |
12596792 |
T |
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