View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12254_high_9 (Length: 277)

Name: NF12254_high_9
Description: NF12254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12254_high_9
NF12254_high_9
[»] chr2 (3 HSPs)
chr2 (41-258)||(33858496-33858713)
chr2 (186-258)||(11272556-11272628)
chr2 (186-250)||(13016037-13016101)
[»] chr8 (4 HSPs)
chr8 (185-258)||(36404050-36404123)
chr8 (199-258)||(37269843-37269902)
chr8 (199-258)||(42941266-42941325)
chr8 (199-253)||(9936427-9936481)
[»] chr4 (1 HSPs)
chr4 (179-258)||(16989632-16989712)
[»] scaffold0760 (1 HSPs)
scaffold0760 (199-258)||(1722-1781)
[»] chr6 (3 HSPs)
chr6 (179-258)||(2920915-2920995)
chr6 (179-258)||(18246525-18246605)
chr6 (185-250)||(32548944-32549009)
[»] chr7 (2 HSPs)
chr7 (198-258)||(31234744-31234804)
chr7 (199-253)||(42460101-42460155)
[»] chr3 (3 HSPs)
chr3 (179-258)||(1259272-1259352)
chr3 (179-258)||(37242560-37242640)
chr3 (179-258)||(53553630-53553709)
[»] chr1 (2 HSPs)
chr1 (199-253)||(32774127-32774181)
chr1 (192-258)||(46594856-46594922)
[»] chr5 (1 HSPs)
chr5 (199-244)||(40296118-40296163)


Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 41 - 258
Target Start/End: Original strand, 33858496 - 33858713
Alignment:
Q  41 cacagttacaagggaggcgcggacaaagccaatcaccaaaacagaagctatacaaaaa-ccccccttaaaaccggaccagccnnnnnnncacctgcagca 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||       |||||||||||    
T  33858496 cacagttacaagggaggcgcggacaaagccaatcaccaaaacagaagctatacaaaaaaccccccttaaaaccggaccagccaaaaaa-cacctgcagca 33858594  T
Q  140 acagcttcaaggagccgaaccaaacccaactcccttagtagattcaaaaaacagccacgttcatcttctatttagacattctcaaggattccaagtccac 239  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33858595 acagcttcaaggagccgaaccaaacccaactcccttagtagattaaaaaaacagccacgttcatcttctatttagacattctcgaggattccaagtccac 33858694  T
Q  240 tcatataagaggaaggaag 258  Q
    |||||||||||||||||||    
T  33858695 tcatataagaggaaggaag 33858713  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 258
Target Start/End: Complemental strand, 11272628 - 11272556
Alignment:
Q  186 aaaaacagccacgttcatcttctatttagacattctcaaggattccaagtccactcatataagaggaaggaag 258  Q
    |||||||||  |||||||||||||||| | || |||| |||| ||||||| |||||||| |||||||| ||||    
T  11272628 aaaaacagcgtcgttcatcttctatttgggcactctctaggaatccaagttcactcatagaagaggaaagaag 11272556  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 13016037 - 13016101
Alignment:
Q  186 aaaaacagccacgttcatcttctatttagacattctcaaggattccaagtccactcatataagag 250  Q
    |||||||||  | ||||||||||||| || || ||||  |||||||||||||||||||| |||||    
T  13016037 aaaaacagcaccattcatcttctattaaggcactctctcggattccaagtccactcataaaagag 13016101  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 258
Target Start/End: Original strand, 36404050 - 36404123
Alignment:
Q  185 aaaaaacagccacgttcatcttctatttagacattctcaaggattccaagtccactcatataagaggaaggaag 258  Q
    ||||||||| ||| ||||||||||||||| |||||||| |||||||||||||||||| || |||||||||||||    
T  36404050 aaaaaacagtcaccttcatcttctatttaaacattctctaggattccaagtccactcgtagaagaggaaggaag 36404123  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 37269843 - 37269902
Alignment:
Q  199 ttcatcttctatttagacattctcaaggattccaagtccactcatataagaggaaggaag 258  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||    
T  37269843 ttcatcttctattaagacattctctaggattccaagtccactcataaaagaggaaggaag 37269902  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 42941325 - 42941266
Alignment:
Q  199 ttcatcttctatttagacattctcaaggattccaagtccactcatataagaggaaggaag 258  Q
    |||||||||||||  ||||||||| ||||||||||||||||||||| |||||||||||||    
T  42941325 ttcatcttctattacgacattctctaggattccaagtccactcataaaagaggaaggaag 42941266  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 9936481 - 9936427
Alignment:
Q  199 ttcatcttctatttagacattctcaaggattccaagtccactcatataagaggaa 253  Q
    |||||||||||||||| || | || ||| ||||||||||||||||| ||||||||    
T  9936481 ttcatcttctatttaggcactgtctagggttccaagtccactcataaaagaggaa 9936427  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 179 - 258
Target Start/End: Complemental strand, 16989712 - 16989632
Alignment:
Q  179 agattcaaaaa-acagccacgttcatcttctatttagacattctcaaggattccaagtccactcatataagaggaaggaag 258  Q
    ||||||||||| |||||| |||||||||||| |||||||||||||| |||||||| ||||||||||| |||||||| ||||    
T  16989712 agattcaaaaagacagccgcgttcatcttctgtttagacattctcatggattccacgtccactcatagaagaggaaagaag 16989632  T

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Target: scaffold0760 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 1722 - 1781
Alignment:
Q  199 ttcatcttctatttagacattctcaaggattccaagtccactcatataagaggaaggaag 258  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||    
T  1722 ttcatcttctattaagacattctctaggattccaagtccactcataaaagaggaaggaag 1781  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 258
Target Start/End: Original strand, 2920915 - 2920995
Alignment:
Q  179 agattcaaaaa-acagccacgttcatcttctatttagacattctcaaggattccaagtccactcatataagaggaaggaag 258  Q
    ||||||||||| | ||||||||||||||||| |||||||||||||  |||||||| ||||||||||| |||||||| ||||    
T  2920915 agattcaaaaagaaagccacgttcatcttctgtttagacattctcgtggattccatgtccactcataaaagaggaaagaag 2920995  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 258
Target Start/End: Original strand, 18246525 - 18246605
Alignment:
Q  179 agattcaaaaa-acagccacgttcatcttctatttagacattctcaaggattccaagtccactcatataagaggaaggaag 258  Q
    ||||||||||| |||||| |||||||||||| |||||||||||||  |||||||| ||||||||||| |||||||| ||||    
T  18246525 agattcaaaaagacagccgcgttcatcttctgtttagacattctcgtggattccacgtccactcatagaagaggaaagaag 18246605  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 250
Target Start/End: Complemental strand, 32549009 - 32548944
Alignment:
Q  185 aaaaaacagccacgttcatcttctatttagacattctcaaggattccaagtccactcatataagag 250  Q
    ||||||||||  | ||||||||||||||||||||| || ||||||| ||||||||| ||| |||||    
T  32549009 aaaaaacagcacccttcatcttctatttagacattatctaggattctaagtccacttataaaagag 32548944  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 258
Target Start/End: Original strand, 31234744 - 31234804
Alignment:
Q  198 gttcatcttctatttagacattctcaaggattccaagtccactcatataagaggaaggaag 258  Q
    ||||||||||| |||||||||||||  |||||||||||||||||||| |||||||| ||||    
T  31234744 gttcatcttctgtttagacattctcgtggattccaagtccactcatagaagaggaaagaag 31234804  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 253
Target Start/End: Original strand, 42460101 - 42460155
Alignment:
Q  199 ttcatcttctatttagacattctcaaggattccaagtccactcatataagaggaa 253  Q
    |||||||||||||||| || |||| ||||||||||||| ||||||| ||||||||    
T  42460101 ttcatcttctatttaggcactctctaggattccaagtctactcataaaagaggaa 42460155  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 258
Target Start/End: Original strand, 1259272 - 1259352
Alignment:
Q  179 agattcaaaaa-acagccacgttcatcttctatttagacattctcaaggattccaagtccactcatataagaggaaggaag 258  Q
    ||||||||||| ||||||  ||||||||||| |||||||||||||  |||||||| ||||||||||| |||||||| ||||    
T  1259272 agattcaaaaagacagccgtgttcatcttctgtttagacattctcgtggattccacgtccactcatagaagaggaaagaag 1259352  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 258
Target Start/End: Original strand, 37242560 - 37242640
Alignment:
Q  179 agattcaaaaa-acagccacgttcatcttctatttagacattctcaaggattccaagtccactcatataagaggaaggaag 258  Q
    ||||||||||| ||||||  ||||||||||| |||||||||||||  |||||||| ||||||||||| |||||||| ||||    
T  37242560 agattcaaaaagacagccgtgttcatcttctgtttagacattctcgtggattccacgtccactcatagaagaggaaagaag 37242640  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 258
Target Start/End: Original strand, 53553630 - 53553709
Alignment:
Q  179 agattcaaaaaacagccacgttcatcttctatttagacattctcaaggattccaagtccactcatataagaggaaggaag 258  Q
    |||| |||||||||||  | ||||||| |||||||| || |||| ||||||||||||||||||||| |||||||| ||||    
T  53553630 agatccaaaaaacagcgcctttcatctcctatttaggcactctctaggattccaagtccactcataaaagaggaaagaag 53553709  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 199 - 253
Target Start/End: Original strand, 32774127 - 32774181
Alignment:
Q  199 ttcatcttctatttagacattctcaaggattccaagtccactcatataagaggaa 253  Q
    |||||||||||||||| || |||| ||||||||||||||||||||| ||||||||    
T  32774127 ttcatcttctatttaggcactctctaggattccaagtccactcataaaagaggaa 32774181  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 258
Target Start/End: Original strand, 46594856 - 46594922
Alignment:
Q  192 agccacgttcatcttctatttagacattctcaaggattccaagtccactcatataagaggaaggaag 258  Q
    |||||| ||||||| ||||||| |||||||  |||||| ||||||||||| || ||||| |||||||    
T  46594856 agccactttcatctcctatttaaacattctttaggatttcaagtccactcgtaaaagagaaaggaag 46594922  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 40296118 - 40296163
Alignment:
Q  199 ttcatcttctatttagacattctcaaggattccaagtccactcata 244  Q
    ||||||||||||||||||| |||  |||||||||||||||||||||    
T  40296118 ttcatcttctatttagacactctttaggattccaagtccactcata 40296163  T

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