View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12254_low_1 (Length: 610)
Name: NF12254_low_1
Description: NF12254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12254_low_1 |
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| [»] scaffold0568 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 14 - 593
Target Start/End: Complemental strand, 45629592 - 45629015
Alignment:
| Q |
14 |
agacagcaaaaacaccagcagcaacagattttgtagcaaacaaaaacatgaggctgc-atataccctcctgcccaaacctgcaacagatcaccgcaaatt |
112 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
45629592 |
agacagcaaaaacaccagcagcaaccgattttgtagcaaacaaaaacatgaggctgccatataccctcctgcccaaacctgcaacagatcaccgcaaatt |
45629493 |
T |
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| Q |
113 |
ttcaaggcatacccaagcctcaaacatatgtctacgaaaagagtctgtttccagctcaattaaatactccccatattttcttgaatgtgataatagcagc |
212 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
45629492 |
ttcaaggcatacccaagcctcaaacatatgtctccgaaaagagcctgtttccagctcaattaaataccccccatattttcttgaatgtgataatagcagc |
45629393 |
T |
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| Q |
213 |
acattccattaaacattcaattggaatgacatataaagtatctgaaaactcaaagctactgcattctaacataaattctaatttatatttttcactatgc |
312 |
Q |
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|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45629392 |
acattccattaa---ttcaattggaatgacatataaagtacctgaaaactcaaagctactgcattctaacataaattctaatttatatttttcactatgc |
45629296 |
T |
|
| Q |
313 |
tcatacacaatgcagttacttctctatttcttacaaaacctcatattacaatgtatcaaaaagcaaacatgttgaaggggagttactctaaatcaaaagc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
45629295 |
tcatacacaatgcagttacttctctatttcttacaaaacctcatattacaatgtatcaaaaagcaaacatgttgaaggggagttacactaaatcaaaaac |
45629196 |
T |
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| Q |
413 |
cagtcagactcattccctaatgtagagatggagatcatacaatacttcaagccatttctagttgtcacctgaagacatagaaagtaatcaatttctcaaa |
512 |
Q |
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| T |
45629195 |
cagtcaaactcattccctaatgtagagatggagatcatacaatacttcaagccatttctagctgtcacctgaagacatagaaagtaatcaatttctcaaa |
45629096 |
T |
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| Q |
513 |
cttgttaaaaaggttttttcaacatttagcaaaaatactctacaagacacatattatgaaatagcaaaacagcacctaatt |
593 |
Q |
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| T |
45629095 |
cttgttaaaaaggtttttccaatatttagcaaaaatactctacaagacacatattatgaaatagcaaaacagcacctaatt |
45629015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0568 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: scaffold0568
Description:
Target: scaffold0568; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 14 - 297
Target Start/End: Original strand, 37 - 318
Alignment:
| Q |
14 |
agacagcaaaaacaccagcagcaacagattttgtagcaaacaaaaacatgaggctgc-atataccctcctgcccaaacctgcaacagatcaccgcaaatt |
112 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
37 |
agacagcaaaaacaccagcagcaaccgattttgtagcaaacaaaaacatgaggctgccatataccctcctgcccaaacctgcaacagatcaccgcaaatt |
136 |
T |
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| Q |
113 |
ttcaaggcatacccaagcctcaaacatatgtctacgaaaagagtctgtttccagctcaattaaatactccccatattttcttgaatgtgataatagcagc |
212 |
Q |
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| T |
137 |
ttcaaggcatacccaagcctcaaacatatgtctccgaaaagagcctgtttccagctcaattaaataccccccatattttcttgaatgtgataatagcagc |
236 |
T |
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| Q |
213 |
acattccattaaacattcaattggaatgacatataaagtatctgaaaactcaaagctactgcattctaacataaattctaattta |
297 |
Q |
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| T |
237 |
acattccatta---attcaattggaatgacatataaagtacctgaaaactcaaagctactgcattctaacataaattctaattta |
318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0568; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 429 - 593
Target Start/End: Original strand, 311 - 475
Alignment:
| Q |
429 |
ctaatgtagagatggagatcatacaatacttcaagccatttctagttgtcacctgaagacatagaaagtaatcaatttctcaaacttgttaaaaaggttt |
528 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
311 |
ctaatttagagatggagatcatacaatacttcaagccatttctagctgtcacctaaagacatagaaagtaatcaatttctcaaacttgttaaaaaggttt |
410 |
T |
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| Q |
529 |
tttcaacatttagcaaaaatactctacaagacacatattatgaaatagcaaaacagcacctaatt |
593 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
411 |
ttccaacatttagcaaaaatactctacaagacacatattatgaaatagcaaaacagcacctaatt |
475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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