View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12254_low_3 (Length: 468)
Name: NF12254_low_3
Description: NF12254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12254_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 11 - 456
Target Start/End: Original strand, 30456845 - 30457290
Alignment:
| Q |
11 |
gagcacagacacaagaggcaccaaagatgaagtgtaaaactattgtaaaacacaaaagaaagaaaacattttctagattacaacttgacatgcgctttcc |
110 |
Q |
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| T |
30456845 |
gagcactgacgcaagaggcaccaaagatgaagtgtaaaactattgtaaaacacaaaagaaagaaaacattttctagattacaacttgacatgcgctttcc |
30456944 |
T |
|
| Q |
111 |
atctcctgtaaatagcatcaaatttgtctcttgcacttgaacttctactctctttgtagaatgcttccttcaacttgttcattgtagaatcatatatgga |
210 |
Q |
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| T |
30456945 |
atctcctgtaaatagcatcaaatttgtctcttgcacttgaacttctactctctttgtagaatgcttccttcaacttgttcattgtagaatcatatatgga |
30457044 |
T |
|
| Q |
211 |
gatccttttatcaagcatttcttcagcaaaccttctaacctctgacagtcttttcaatttgcaaagaccaataagcaccatgttcgcactcacatcaagc |
310 |
Q |
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| T |
30457045 |
gatccttttatcaagcatttcttcagcaaaccttctaacctctgacagtcttttcaatttgcaaagaccaataagcaccatgttcgcactcacatcaagc |
30457144 |
T |
|
| Q |
311 |
accctaacgcgagtttcaaccatgtaactccaaatctcaagtgctgcatcagggtcatcacaattaaacaacatttcaatggctacagcacaattagaag |
410 |
Q |
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| T |
30457145 |
accctaacacgagtttcaaccatgtaactccaaatctcaagtgctgcatcagggtcatcacaattaaacaacatttcaatggctacagcacaattagaag |
30457244 |
T |
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| Q |
411 |
ttgtgggcaaccactcattcctgatcatctcagcaaaaaacctctc |
456 |
Q |
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| T |
30457245 |
ttgtgggcaaccactcattcttgatcatctcagcaaaaaacctctc |
30457290 |
T |
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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 276 - 353
Target Start/End: Original strand, 1388891 - 1388968
Alignment:
| Q |
276 |
gaccaataagcaccatgttcgcactcacatcaagcaccctaacgcgagtttcaaccatgtaactccaaatctcaagtg |
353 |
Q |
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||||||| |||| ||| || ||||||||||||| |||| ||| ||||||||| |||||||||||||||| ||||||| |
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| T |
1388891 |
gaccaatgagcaacatatttgcactcacatcaaacacctcaacacgagtttcagccatgtaactccaaatatcaagtg |
1388968 |
T |
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