View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12254_low_5 (Length: 379)
Name: NF12254_low_5
Description: NF12254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12254_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 2274247 - 2273886
Alignment:
| Q |
1 |
aaagatcatcagaggtttaagagagttgttgtgatcacgatgaatttattcttggcattgattatgtttgctgcaatgaatatatcatcatattttggta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2274247 |
aaagatcatcagaggtttaagagagttgttgtgatcacgatgaatttattcttggcattgattatgtttgctgcaatgaatatatcatcatattttggta |
2274148 |
T |
|
| Q |
101 |
aattcatggtacaacataacattgctgtgatgctcatagtccttgctgttgtttcgatttttcaaatagcacttaatattggaagtacactacatcgtgt |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2274147 |
aatttatggtacaacataacattgctgtgatgctcatagtccttgctgttgtttcgatttttcaaatagcacttaatattggaagtacactacatcgtgt |
2274048 |
T |
|
| Q |
201 |
ccctaatcctaaccctaaccctctcaaaaacaacaacgaaaacaccatggtaatcttatacattctggtgctatcaagtgtaatatcaagcatagaagtg |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2274047 |
ccctaaccctaaccctaaccctctcaaaaacaacaacgaaaacaccatggtaatcttatacattctggtgctatcaagtgtaatatcaagcatagaagtg |
2273948 |
T |
|
| Q |
301 |
agacttgtttcaaatactgccgcagcgattattaatcttatattatgtcatatcactcttac |
362 |
Q |
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||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2273947 |
agactcgtttcaaatactgccgcagcgattatcaatcttatattatgtcatatcactcttac |
2273886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 2272689 - 2272325
Alignment:
| Q |
1 |
aaagatcatcagaggtttaagagagttgttgtgatcacgatgaatttattcttggcattgattatgtttgctgcaatgaatatatcatcatattttggta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272689 |
aaagatcatcagaggtttaagagagttgttgtgatcacgatgaatttattcttggcattgattatgtttgctgcaatgaatatatcatcatattttggta |
2272590 |
T |
|
| Q |
101 |
aattcatggtacaacataacattgctgtgatgctcatagtccttgctgttgtttcgatttttcaaatagcacttaatattggaagtacactacatcgtgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272589 |
aattcatggtacaacataacattgctgtgatgctcatagtccttgctgttgtttcgatttttcaaatagcacttaatattggaagtacactacatcgtgt |
2272490 |
T |
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| Q |
201 |
ccctaatcctaaccctaaccctctcaaaaacaacaac---gaaaacaccatggtaatcttatacattctggtgctatcaagtgtaatatcaagcatagaa |
297 |
Q |
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|||||| |||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2272489 |
ccctaaccctaaccctaaccctcacaaaaacaacaacaataacaacaccatggtaatcttatacattctgctgctatcaagtgtaatatcaagcatagaa |
2272390 |
T |
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| Q |
298 |
gtgagacttgtttcaaatactgccgcagcgattattaatcttatattatgtcatatcactcttac |
362 |
Q |
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||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
2272389 |
gtgagacttgtttcaaatactgccgcagcgattatcaattttatattatgtcatatcactcttac |
2272325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 11 - 219
Target Start/End: Original strand, 373328 - 373536
Alignment:
| Q |
11 |
agaggtttaagagagttgttgtgatcacgatgaatttattcttggcattgattatgtttgctgcaatgaatatatcatcatattttggtaaattcatggt |
110 |
Q |
| |
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|||||||||||| | | ||||||| || |||| ||||| ||||| |||||||||| | | |||||||||||| |||||||||||||| |||||||||| |
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| T |
373328 |
agaggtttaagaaaatagttgtgactacaatgagtttatccttggtattgattatgatcggtgcaatgaatatgtcatcatattttgggaaattcatggc |
373427 |
T |
|
| Q |
111 |
acaacataacattgctgtgatgctcatagtccttgctgttgtttcgatttttcaaatagcacttaatattggaagtacactacatcgtgtccctaatcct |
210 |
Q |
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||||| ||| |||||||||||||||| || |||||||||||| | ||||||||||||||| | ||| || ||||||||||||||||| || ||| |
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| T |
373428 |
ggaacatgacactgctgtgatgctcatactcattgctgttgttttcttatttcaaatagcacttggttatggtaggacactacatcgtgtcccaaaccct |
373527 |
T |
|
| Q |
211 |
aaccctaac |
219 |
Q |
| |
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||||||||| |
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| T |
373528 |
aaccctaac |
373536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 312
Target Start/End: Original strand, 373550 - 373611
Alignment:
| Q |
251 |
taatcttatacattctggtgctatcaagtgtaatatcaagcatagaagtgagacttgtttca |
312 |
Q |
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||||| |||||| |||| | ||||||||||||||||||||||| |||| ||| ||||||||| |
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| T |
373550 |
taatcatatacactctgctcctatcaagtgtaatatcaagcattgaagcgagtcttgtttca |
373611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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