View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12254_low_6 (Length: 375)

Name: NF12254_low_6
Description: NF12254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12254_low_6
NF12254_low_6
[»] chr5 (3 HSPs)
chr5 (24-357)||(25943291-25943623)
chr5 (30-80)||(34235572-34235622)
chr5 (285-351)||(17460207-17460274)
[»] chr4 (4 HSPs)
chr4 (108-357)||(28011399-28011648)
chr4 (25-73)||(28011349-28011397)
chr4 (127-218)||(29897176-29897265)
chr4 (303-353)||(11420346-11420397)
[»] chr2 (9 HSPs)
chr2 (92-355)||(23151948-23152215)
chr2 (92-355)||(23563205-23563472)
chr2 (92-218)||(39613787-39613911)
chr2 (38-218)||(25416235-25416415)
chr2 (262-357)||(39505071-39505167)
chr2 (288-357)||(17978891-17978961)
chr2 (300-348)||(7676381-7676430)
chr2 (185-241)||(27761450-27761505)
chr2 (24-72)||(39613739-39613787)
[»] chr7 (6 HSPs)
chr7 (185-345)||(17817839-17817999)
chr7 (24-203)||(13827872-13828049)
chr7 (287-348)||(21570449-21570511)
chr7 (99-140)||(2092698-2092739)
chr7 (267-357)||(7211281-7211372)
chr7 (186-218)||(2092631-2092663)
[»] chr6 (5 HSPs)
chr6 (24-218)||(32984617-32984809)
chr6 (24-218)||(17866445-17866635)
chr6 (24-218)||(17875999-17876189)
chr6 (287-356)||(29410365-29410435)
chr6 (285-351)||(22791924-22791991)
[»] chr3 (4 HSPs)
chr3 (24-218)||(25535533-25535725)
chr3 (24-218)||(14307940-14308132)
chr3 (287-357)||(37098260-37098329)
chr3 (287-351)||(2872265-2872330)
[»] chr8 (6 HSPs)
chr8 (256-357)||(13303038-13303141)
chr8 (24-164)||(13303213-13303352)
chr8 (287-357)||(26025435-26025506)
chr8 (291-355)||(25114681-25114746)
chr8 (113-218)||(32135827-32135930)
chr8 (262-314)||(11712614-11712666)
[»] scaffold0735 (1 HSPs)
scaffold0735 (93-214)||(2521-2639)
[»] chr1 (2 HSPs)
chr1 (93-214)||(42880401-42880519)
chr1 (99-163)||(18283960-18284024)


Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 24 - 357
Target Start/End: Complemental strand, 25943623 - 25943291
Alignment:
Q  24 aggtttctaggaatattggttaatttttgagagtttagtgttgttgataattttt-cctgtaaataatgatgatggtatgaatgcggaaaaataaaagag 122  Q
    |||||||||| ||||||||| ||||||| ||||||| | ||||||||| |||||| || |||||||||||||| |||||||||||||||||| |||||||    
T  25943623 aggtttctagcaatattggtcaatttttaagagtttcgagttgttgattattttttccggtaaataatgatgaaggtatgaatgcggaaaaagaaaagag 25943524  T
Q  123 taaaggaagaagaaaagaacacaggacaatttatagtggttttcctctaaagtttagggttaatccactcccttcacaccccgcgaaggaattcaccacg 222  Q
    ||| |||||||||||||| |||| || | || |||||||||  ||||||||  ||| ||| | ||||||||||||||||||||||||||| ||||| | |    
T  25943523 taagggaagaagaaaaga-cacaagagagtt-atagtggttcccctctaaaccttaaggt-actccactcccttcacaccccgcgaaggatttcactatg 25943427  T
Q  223 caaagaatctttgttacaaagcaacattaatctaaaggtcccctaacaatatttctctacacaccaagatagcaccccactatc-tttacaacaagaatc 321  Q
     |||||||||||||||||||| ||| ||||||  || | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25943426 taaagaatctttgttacaaagtaactttaatcccaaaggcccctaacaatatttctctacacaccaagatagcaccccactatcttttacaacaagaatc 25943327  T
Q  322 ttcaccaaatctatgatgaaattctcacaaacaaac 357  Q
    ||||||||| ||||||||||||||||||| ||||||    
T  25943326 ttcaccaaacctatgatgaaattctcacacacaaac 25943291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 34235622 - 34235572
Alignment:
Q  30 ctaggaatattggttaatttttgagagtttagtgttgttgataatttttcc 80  Q
    |||||||||||||||||||||||  ||||||| ||| ||||||||||||||    
T  34235622 ctaggaatattggttaatttttgcaagtttagcgttcttgataatttttcc 34235572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 351
Target Start/End: Original strand, 17460207 - 17460274
Alignment:
Q  285 accaagatagcaccccactatctttacaacaagaatcttcaccaaatc-tatgatgaaattctcacaa 351  Q
    |||||||||| || | | |||||||||||||||||||||||||||| | |||||| |||||| |||||    
T  17460207 accaagatagaactcaagtatctttacaacaagaatcttcaccaaaccttatgataaaattcacacaa 17460274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 108 - 357
Target Start/End: Original strand, 28011399 - 28011648
Alignment:
Q  108 ggaaaaataaaagagtaaaggaagaagaaaagaacacaggacaatttatagtggttttcctctaaagtttagggttaatccactcccttcacaccccgcg 207  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||| ||||||||  ||| ||| ||||||||| | ||||| ||||||    
T  28011399 ggaaaaataaatgagtaagggaagaagaaaagaacacaggacaatttataatggtttccctctaaatcttaaggtcaatccactcacatcacatcccgcg 28011498  T
Q  208 aaggaattcaccacgcaaagaatctttgttacaaagcaacattaatctaaaggtcccctaacaatatttctctacacaccaagatagcaccccactatct 307  Q
    ||||| || |||| | |||||||||||||||||||||||| ||||||  |||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  28011499 aaggactttaccatgtaaagaatctttgttacaaagcaaccttaatcccaaggccccctaacaatatttctttacacaccaagatagcaccccactatct 28011598  T
Q  308 ttacaacaagaatcttcaccaaatctatgatgaaattctcacaaacaaac 357  Q
    ||||||||||||||||||||||| || |||| ||||||| ||||||||||    
T  28011599 ttacaacaagaatcttcaccaaacctgtgataaaattcttacaaacaaac 28011648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 28011349 - 28011397
Alignment:
Q  25 ggtttctaggaatattggttaatttttgagagtttagtgttgttgataa 73  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28011349 ggtttctaggaatattggttaatttttgagagtttagcgttgttgataa 28011397  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 218
Target Start/End: Complemental strand, 29897265 - 29897176
Alignment:
Q  127 ggaagaagaaaagaacacaggacaatttatagtggttttcctctaaagtttagggttaatccactcccttcacaccccgcgaaggaattcac 218  Q
    |||||||||||||| |||| || |||| |||||||||| ||||||||  | ||||| | |||||||| ||||||||| ||||||||||||||    
T  29897265 ggaagaagaaaaga-cacaagagaatt-atagtggtttccctctaaacctaagggtcagtccactccattcacaccctgcgaaggaattcac 29897176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 353
Target Start/End: Original strand, 11420346 - 11420397
Alignment:
Q  303 tatctttacaacaagaatcttcaccaaatc-tatgatgaaattctcacaaac 353  Q
    |||| |||||||||||||||||||| || | |||||||||||||||||||||    
T  11420346 tatcattacaacaagaatcttcaccgaaccctatgatgaaattctcacaaac 11420397  T

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Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 92 - 355
Target Start/End: Original strand, 23151948 - 23152215
Alignment:
Q  92 atgatggtatgaatgcggaaaaataaaagagtaaaggaagaagaaaagaacacaggacaatttatagtggttttcctctaaagtttagggttaatccact 191  Q
    |||| |||||||||||||||||||||||| |||  |||||| ||||||||  || |||| ||||| ||||||  ||||||||  | |||||  |||||||    
T  23151948 atgaaggtatgaatgcggaaaaataaaagtgtag-ggaaga-gaaaagaatgcaagacagtttatcgtggttcccctctaaacataagggtacatccact 23152045  T
Q  192 cccttcacaccccgcgaaggaatt----caccacgcaaagaatctttgttacaaagcaacattaatct-aaaggtcccctaacaatatttctctacacac 286  Q
    ||| |||||||  | |||||| ||    ||| | | |||||||||||||||||||||||  ||||||  ||||| ||| |||||||||||||||||||||    
T  23152046 cccctcacaccatgtgaaggatttttttcactatgtaaagaatctttgttacaaagcaatcttaatcccaaaggccccataacaatatttctctacacac 23152145  T
Q  287 caagatagcaccccactatc-tttacaacaagaatcttcaccaaatctatgatgaaattctcacaaacaa 355  Q
    ||||||||||||||||| || |||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  23152146 caagatagcaccccactttcttttacaacaagagtcttcaccaaacctatgatgaaattctcacaaacaa 23152215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 92 - 355
Target Start/End: Original strand, 23563205 - 23563472
Alignment:
Q  92 atgatggtatgaatgcggaaaaataaaagagtaaaggaagaagaaaagaacacaggacaatttatagtggttttcctctaaagtttagggttaatccact 191  Q
    |||| |||||||||||||||||||||||| |||  |||||| ||||||||  || |||| ||||| ||||||  ||||||||  | |||||  |||||||    
T  23563205 atgaaggtatgaatgcggaaaaataaaagtgtag-ggaaga-gaaaagaatgcaagacagtttatcgtggttcccctctaaacataagggtacatccact 23563302  T
Q  192 cccttcacaccccgcgaaggaatt----caccacgcaaagaatctttgttacaaagcaacattaatct-aaaggtcccctaacaatatttctctacacac 286  Q
    ||| |||||||  | |||||| ||    ||| | | |||||||||||||||||||||||  ||||||  ||||| ||| |||||||||||||||||||||    
T  23563303 cccctcacaccatgtgaaggatttttttcactatgtaaagaatctttgttacaaagcaatcttaatcccaaaggccccataacaatatttctctacacac 23563402  T
Q  287 caagatagcaccccactatc-tttacaacaagaatcttcaccaaatctatgatgaaattctcacaaacaa 355  Q
    ||||||||||||||||| || |||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  23563403 caagatagcaccccactttcttttacaacaagagtcttcaccaaacctatgatgaaattctcacaaacaa 23563472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 92 - 218
Target Start/End: Original strand, 39613787 - 39613911
Alignment:
Q  92 atgatggtatgaatgcggaaaaataaaagagtaaaggaagaagaaaagaacacaggacaatttatagtggttttcctctaaagtttagggttaatccact 191  Q
    |||| ||||||||||||||||||||||||||||| | |||||||||||| |||| || |||| |||||||||  ||||||||  ||||||| | ||||||    
T  39613787 atgaaggtatgaatgcggaaaaataaaagagtaaggaaagaagaaaaga-cacaagagaatt-atagtggttcccctctaaatcttagggtcagtccact 39613884  T
Q  192 cccttcacaccccgcgaaggaattcac 218  Q
    |||||||||||||||||||||||||||    
T  39613885 cccttcacaccccgcgaaggaattcac 39613911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 38 - 218
Target Start/End: Original strand, 25416235 - 25416415
Alignment:
Q  38 attggttaatttttgagagtttagtgttgttgataatttttcctgtaaataatgatgatggtat--gaatgcggaaaaataaaagagtaaaggaagaaga 135  Q
    |||||||||||||    ||||||| || ||||||||||||||| |||||||||||||| |||||  ||||| |||||||||||||||||| |||||||||    
T  25416235 attggttaattttacttagtttagcgtagttgataatttttccggtaaataatgatgaaggtatatgaatgtggaaaaataaaagagtaagggaagaaga 25416334  T
Q  136 aaagaacacaggacaatttatagtggttttcctctaaagtttagggttaatccactcccttcacaccccgcgaaggaattcac 218  Q
    |||| ||||| || || ||||| |||||  ||||||||  | ||||| | | |||| |||||||| ||||||||| |||||||    
T  25416335 aaag-acacaagataa-ttataatggttcccctctaaacctcagggtcagtacacttccttcacatcccgcgaagaaattcac 25416415  T

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Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 262 - 357
Target Start/End: Original strand, 39505071 - 39505167
Alignment:
Q  262 cccctaacaatatttctctacacaccaagatagcaccccactatctttacaacaagaatcttcaccaaa-tctatgatgaaattctcacaaacaaac 357  Q
    ||||||||||| ||||| |||| ||||||||||||||||||||||| || ||||||||| |||||||||  ||| ||||||||||||||||||||||    
T  39505071 cccctaacaatctttctatacaaaccaagatagcaccccactatctctataacaagaatattcaccaaaccctaggatgaaattctcacaaacaaac 39505167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 288 - 357
Target Start/End: Original strand, 17978891 - 17978961
Alignment:
Q  288 aagatagcaccccactatctttacaacaagaatcttcaccaaa-tctatgatgaaattctcacaaacaaac 357  Q
    |||||||||||| ||||| |||||||||| ||||||| ||||| |||||||||||||||||||||||||||    
T  17978891 aagatagcaccctactatatttacaacaaaaatcttcgccaaactctatgatgaaattctcacaaacaaac 17978961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 300 - 348
Target Start/End: Complemental strand, 7676430 - 7676381
Alignment:
Q  300 cactatctttacaacaagaatcttcaccaaa-tctatgatgaaattctca 348  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7676430 cactatctttacaacaagaatcttcaccaaactctatgatgaaattctca 7676381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 27761505 - 27761450
Alignment:
Q  185 atccactcccttcacaccccgcgaaggaattcaccacgcaaagaatctttgttacaa 241  Q
    ||||||||| |||||||||||||||||||||||||| |   ||||||||||||||||    
T  27761505 atccactccattcacaccccgcgaaggaattcaccatg-ttagaatctttgttacaa 27761450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 39613739 - 39613787
Alignment:
Q  24 aggtttctaggaatattggttaatttttgagagtttagtgttgttgata 72  Q
    |||||||||||||||||||||||||||||  ||||||| ||| ||||||    
T  39613739 aggtttctaggaatattggttaatttttgtaagtttagcgttcttgata 39613787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 185 - 345
Target Start/End: Complemental strand, 17817999 - 17817839
Alignment:
Q  185 atccactcccttcacaccccgcgaaggaattcaccacgcaaagaatctttgttacaaagcaacattaatctaaaggtcccctaacaatatttctctacac 284  Q
    ||||||||||||||||||||| |||||||||||| | | || |||||||||| |||||||||| ||||||  ||| ||||||||||||||||||||||||    
T  17817999 atccactcccttcacaccccgtgaaggaattcactatgtaa-gaatctttgtcacaaagcaaccttaatcccaagatcccctaacaatatttctctacac 17817901  T
Q  285 accaagatagcaccccactatc-tttacaacaagaatcttcaccaaatctatgatgaaattc 345  Q
    ||||||||| |||| ||||||| ||||| |||||||||||||||||| |||||| |||||||    
T  17817900 accaagataacacctcactatcttttacgacaagaatcttcaccaaacctatgacgaaattc 17817839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 24 - 203
Target Start/End: Complemental strand, 13828049 - 13827872
Alignment:
Q  24 aggtttctaggaatattggttaatttttgagagtttagtgttgttgataatttttcctgtaaataatgatgatggtatgaatgcggaaaaataaaagagt 123  Q
    |||||| ||||||||||||||||||||||  ||||||| ||| |||||||||||| | | || | |  |||| |||||||||||||||||||||||||||    
T  13828049 aggtttttaggaatattggttaatttttgcaagtttagcgttcttgataattttttcggaaacttaatatgaaggtatgaatgcggaaaaataaaagagt 13827950  T
Q  124 aaaggaagaagaaaagaacacaggacaatttatagtggttttcctctaaagtttagggttaatccactcccttcacaccc 203  Q
    || ||||||||||||| ||||| || || |||||||||||  ||||||||  | | ||  | ||||||||||||||||||    
T  13827949 aagggaagaagaaaag-acacaagagaa-ttatagtggttcccctctaaacctcaaggccagtccactcccttcacaccc 13827872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 287 - 348
Target Start/End: Original strand, 21570449 - 21570511
Alignment:
Q  287 caagatagcaccccactatctttacaacaagaatcttcaccaaat-ctatgatgaaattctca 348  Q
    |||||||||||| |||| | | ||||||||||||||||||||||| |||||||||||||||||    
T  21570449 caagatagcacctcactctatctacaacaagaatcttcaccaaatcctatgatgaaattctca 21570511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 2092739 - 2092698
Alignment:
Q  99 tatgaatgcggaaaaataaaagagtaaaggaagaagaaaaga 140  Q
    |||||||| |||||||||||||||||| ||||||||||||||    
T  2092739 tatgaatgtggaaaaataaaagagtaagggaagaagaaaaga 2092698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 357
Target Start/End: Complemental strand, 7211372 - 7211281
Alignment:
Q  267 aacaatatttctctacacaccaagatagcaccccactatctttacaacaagaatcttcaccaaatc-tatgatgaaattctcacaaacaaac 357  Q
    |||||||||||| ||||   ||||||| ||| ||| ||||||||||||||||||||||| | || | | |||| | ||||||||||||||||    
T  7211372 aacaatatttctatacaacacaagataacactccattatctttacaacaagaatcttcatcgaaccttgtgataatattctcacaaacaaac 7211281  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 218
Target Start/End: Complemental strand, 2092663 - 2092631
Alignment:
Q  186 tccactcccttcacaccccgcgaaggaattcac 218  Q
    ||||||||||||||||||| |||||||||||||    
T  2092663 tccactcccttcacaccccacgaaggaattcac 2092631  T

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Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 24 - 218
Target Start/End: Complemental strand, 32984809 - 32984617
Alignment:
Q  24 aggtttctaggaatattggttaatttttgagagtttagtgttgttgataatttttcctgtaaataatgatgatggtatgaatgcggaaaaataaaagagt 123  Q
    |||||||| || |||||||||||||||||  ||||||||||| |||||||||||||| | |  | || |||| ||||||||||||||||||||||||| |    
T  32984809 aggtttctcggtatattggttaatttttgtaagtttagtgttcttgataatttttccggaatcttattatgaaggtatgaatgcggaaaaataaaagaat 32984710  T
Q  124 aaaggaagaagaaaagaacacaggacaatttatagtggttttcctctaaagtttagggttaatccactcccttcacaccccgcgaaggaattcac 218  Q
    || ||||||| |||||| |||| || |||| |||||||||  ||||||||  ||||||| | |||||||||||| ||||||||||||||||||||    
T  32984709 aagggaagaaaaaaaga-cacaagagaatt-atagtggttcccctctaaaccttagggtcagtccactcccttcgcaccccgcgaaggaattcac 32984617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 24 - 218
Target Start/End: Complemental strand, 17866635 - 17866445
Alignment:
Q  24 aggtttctaggaatattggttaatttttgagagtttagtgttgttgataatttttcctgtaaataatgatgatggtatgaatgcggaaaaataaaagagt 123  Q
    |||||||||||||||||||||||||||||  ||||||| ||| ||||| |||||||| | || | |  |||| ||||||||   ||||||||||||||||    
T  17866635 aggtttctaggaatattggttaatttttgcaagtttagcgttcttgatcatttttccagaaacttaatatgaaggtatgaa--aggaaaaataaaagagt 17866538  T
Q  124 aaaggaagaagaaaagaacacaggacaatttatagtggttttcctctaaagtttagggttaatccactcccttcacaccccgcgaaggaattcac 218  Q
    || ||||||||||||| ||||| || || |||||||||||  ||||||||  ||||||| | ||||||||||||||||||| ||||||| |||||    
T  17866537 aagggaagaagaaaag-acacaagagaa-ttatagtggttcccctctaaaccttagggtcagtccactcccttcacaccccacgaaggatttcac 17866445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 24 - 218
Target Start/End: Complemental strand, 17876189 - 17875999
Alignment:
Q  24 aggtttctaggaatattggttaatttttgagagtttagtgttgttgataatttttcctgtaaataatgatgatggtatgaatgcggaaaaataaaagagt 123  Q
    |||||||||||||||||||||||||||||  ||||||| ||| ||||| |||||||| | || | |  |||| ||||||||   ||||||||||||||||    
T  17876189 aggtttctaggaatattggttaatttttgcaagtttagcgttcttgatcatttttccagaaacttaatatgaaggtatgaa--aggaaaaataaaagagt 17876092  T
Q  124 aaaggaagaagaaaagaacacaggacaatttatagtggttttcctctaaagtttagggttaatccactcccttcacaccccgcgaaggaattcac 218  Q
    || ||||||||||||| ||||| || || |||||||||||  ||||||||  ||||||| | ||||||||||||||||||| ||||||| |||||    
T  17876091 aagggaagaagaaaag-acacaagagaa-ttatagtggttcccctctaaaccttagggtcagtccactcccttcacaccccacgaaggatttcac 17875999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 356
Target Start/End: Original strand, 29410365 - 29410435
Alignment:
Q  287 caagatagcaccccactatctttacaacaagaatcttcaccaaa-tctatgatgaaattctcacaaacaaa 356  Q
    |||||||||||  |||||||||| |||||  ||||||||||||| |||||||| ||||| |||||||||||    
T  29410365 caagatagcacttcactatctttgcaacataaatcttcaccaaactctatgataaaattttcacaaacaaa 29410435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 351
Target Start/End: Complemental strand, 22791991 - 22791924
Alignment:
Q  285 accaagatagcaccccactatctttacaacaagaatcttcaccaaa-tctatgatgaaattctcacaa 351  Q
    |||||||||| || ||||||||||||||||| |||| |||||||||  ||||||  ||||||||||||    
T  22791991 accaagatagaactccactatctttacaacaggaattttcaccaaacactatgacaaaattctcacaa 22791924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 24 - 218
Target Start/End: Original strand, 25535533 - 25535725
Alignment:
Q  24 aggtttctaggaatattggttaatttttgagagtttagtgttgttgataatttttcctgtaaataatgatgatggtatgaatgcggaaaaataaaagagt 123  Q
    ||||||| |||||||||||||||||||||  ||||||| ||| |||||||||||||  | || | |  |||| |||||||||| ||||||||||||||||    
T  25535533 aggtttccaggaatattggttaatttttgcaagtttagcgttcttgataatttttctggaaacttaatatgaaggtatgaatgaggaaaaataaaagagt 25535632  T
Q  124 aaaggaagaagaaaagaacacaggacaatttatagtggttttcctctaaagtttagggttaatccactcccttcacaccccgcgaaggaattcac 218  Q
    || ||||||| |||||| |||| || |||| |||||||||  ||||||||  ||||||| | |||||||||||||||||||||||||||||||||    
T  25535633 aagggaagaaaaaaaga-cacaagagaatt-atagtggttcccctctaaaccttagggtcagtccactcccttcacaccccgcgaaggaattcac 25535725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 24 - 218
Target Start/End: Original strand, 14307940 - 14308132
Alignment:
Q  24 aggtttctaggaatatt-ggttaatttttgagagtttagtgttgttgataatttttcctgtaaataatgatgatggtatgaatgcggaaaaataaaagag 122  Q
    ||||||||||||||||| ||| ||||| ||  ||||| | |||||||||||||||||| |||||||||||||| | ||||||| ||||||||||||||||    
T  14307940 aggtttctaggaatatttggtcaatttatgcaagtttcgcgttgttgataatttttccggtaaataatgatgaag-tatgaatacggaaaaataaaagag 14308038  T
Q  123 taaaggaagaagaaaagaacacaggacaatttatagtggttttcctctaaagtttagggttaatccactcccttcacaccccgcgaaggaattcac 218  Q
    ||| ||||||||||||| ||| | || || |||||||| ||  ||||||||  ||||||| | |||||||||||||||||| |||||||| |||||    
T  14308039 taagggaagaagaaaag-acaaaagagaa-ttatagtgattcccctctaaatcttagggtcagtccactcccttcacaccctgcgaaggatttcac 14308132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 287 - 357
Target Start/End: Original strand, 37098260 - 37098329
Alignment:
Q  287 caagatagcaccccactatctttacaacaagaatcttcaccaaatctatgatgaaattctcacaaacaaac 357  Q
    ||||||||||||||||| || |||||||||||||||||| |||| || |||||||||||||||||||||||    
T  37098260 caagatagcaccccactgtccttacaacaagaatcttca-caaaactctgatgaaattctcacaaacaaac 37098329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 287 - 351
Target Start/End: Original strand, 2872265 - 2872330
Alignment:
Q  287 caagatagcaccccactatctttacaacaagaatcttcaccaaa-tctatgatgaaattctcacaa 351  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||  |||||||||||||| |||||    
T  2872265 caagatagcactccaatatctttacaacaagaatcttcaccaaaccctatgatgaaattcccacaa 2872330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 256 - 357
Target Start/End: Complemental strand, 13303141 - 13303038
Alignment:
Q  256 aaaggtcccctaacaatatttctctacacaccaagatagca-ccccactat-ctttacaacaagaatcttcaccaaatctatgatgaaattctcacaaac 353  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||  |||||||||| ||||||||||||| |||||||||||||||||||||     
T  13303141 aaaggccccctaacaatatttctctacacaccaagatagcacccccactatattttacaacaaaaatcttcaccaaacctatgatgaaattctcacaaag 13303042  T
Q  354 aaac 357  Q
    ||||    
T  13303041 aaac 13303038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 164
Target Start/End: Complemental strand, 13303352 - 13303213
Alignment:
Q  24 aggtttctaggaatattggttaatttttgagagtttagtgttgttgataatttttcctgtaaataatgatgatggtatgaatgcggaaaaataaaagagt 123  Q
    |||||| ||||| ||||||| |||||||||  ||||| |||| ||| || ||||||| | ||||| |||||| |||||||||||| ||||||||||| ||    
T  13303352 aggtttgtaggattattggtaaatttttgaaggtttaatgttcttgtta-tttttccggaaaatattgatgaaggtatgaatgcgaaaaaataaaagtgt 13303254  T
Q  124 aaaggaagaagaaaagaacacaggacaatttatagtggttt 164  Q
    || |||||||||||| |||| | || ||||||| |||||||    
T  13303253 aagggaagaagaaaataacaaaagataatttatcgtggttt 13303213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 287 - 357
Target Start/End: Original strand, 26025435 - 26025506
Alignment:
Q  287 caagatagcaccccactatctttacaacaagaatcttcaccaaatc-tatgatgaaattctcacaaacaaac 357  Q
    ||||||||||| |||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||    
T  26025435 caagatagcacaccactatctttacaacaagaatcttcaccacaccttatgatgaaattctcacaaacaaac 26025506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 25114681 - 25114746
Alignment:
Q  291 atagcaccccactatctttacaacaagaatcttcacca-aatctatgatgaaattctcacaaacaa 355  Q
    ||||||||| | |||||||||||||||||||||||||| | |||||| ||||||||||||||||||    
T  25114681 atagcaccctattatctttacaacaagaatcttcaccagactctatgttgaaattctcacaaacaa 25114746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 113 - 218
Target Start/End: Complemental strand, 32135930 - 32135827
Alignment:
Q  113 aataaaagagtaaaggaagaagaaaagaacacaggacaatttatagtggttttcctctaaagtttagggttaatccactcccttcacaccccgcgaagga 212  Q
    ||||||||||||| ||||||| |||||| || | || | ||||||||||||  ||||||||  |||||||   |||||||||||||||||||||||||||    
T  32135930 aataaaagagtaagggaagaa-aaaaga-caaaagagagtttatagtggttcccctctaaaccttagggtcggtccactcccttcacaccccgcgaagga 32135833  T
Q  213 attcac 218  Q
    ||||||    
T  32135832 attcac 32135827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 11712614 - 11712666
Alignment:
Q  262 cccctaacaatatttctctacacaccaagatagcaccccactatctttacaac 314  Q
    ||||||||||||||||| |||| | ||||||| |||  |||||||||||||||    
T  11712614 cccctaacaatatttctatacaaatcaagataacacttcactatctttacaac 11712666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0735 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0735
Description:

Target: scaffold0735; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 2521 - 2639
Alignment:
Q  93 tgatggtatgaatgcggaaaaataaaagagtaaaggaagaagaaaagaacacaggacaatttatagtggttttcctctaaagtttagggttaatccactc 192  Q
    |||||||||||||  ||||||||||||||||||  ||||| ||||| |||||  ||||||||||||| ||| |||||||||  ||||||| ||||||| |    
T  2521 tgatggtatgaatatggaaaaataaaagagtaagagaaga-gaaaaaaacac--gacaatttatagtagttctcctctaaaccttagggtcaatccaccc 2617  T
Q  193 ccttcacaccccgcgaaggaat 214  Q
    |||||||| |||| ||||||||    
T  2618 ccttcacatcccgtgaaggaat 2639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 93 - 214
Target Start/End: Complemental strand, 42880519 - 42880401
Alignment:
Q  93 tgatggtatgaatgcggaaaaataaaagagtaaaggaagaagaaaagaacacaggacaatttatagtggttttcctctaaagtttagggttaatccactc 192  Q
    |||||||||||||  ||||||||||||||||||  ||||| ||||| |||||  ||||||||||||| ||| |||||||||  ||||||| ||||||| |    
T  42880519 tgatggtatgaatatggaaaaataaaagagtaagagaaga-gaaaaaaacac--gacaatttatagtagttctcctctaaaccttagggtcaatccaccc 42880423  T
Q  193 ccttcacaccccgcgaaggaat 214  Q
    |||||||| |||| ||||||||    
T  42880422 ccttcacatcccgtgaaggaat 42880401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 18284024 - 18283960
Alignment:
Q  99 tatgaatgcggaaaaataaaagagtaaaggaagaagaaaagaacacaggacaatttatagtggtt 163  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||| ||||||    
T  18284024 tatgaatgcggacaaataaaagagtaagggaagaagaaaagaacacaagacaatttatcgtggtt 18283960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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