View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12254_low_7 (Length: 367)

Name: NF12254_low_7
Description: NF12254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12254_low_7
NF12254_low_7
[»] chr2 (7 HSPs)
chr2 (18-350)||(34686798-34687122)
chr2 (18-350)||(34709210-34709534)
chr2 (39-108)||(16229508-16229573)
chr2 (82-133)||(14268741-14268791)
chr2 (42-75)||(35888174-35888207)
chr2 (89-141)||(35888637-35888689)
chr2 (82-126)||(42205843-42205886)
[»] chr8 (1 HSPs)
chr8 (92-133)||(2517108-2517148)
[»] chr4 (2 HSPs)
chr4 (86-131)||(21886520-21886565)
chr4 (89-133)||(32369927-32369970)
[»] chr7 (1 HSPs)
chr7 (82-126)||(32855362-32855405)
[»] chr6 (2 HSPs)
chr6 (82-126)||(6074035-6074078)
chr6 (89-133)||(34625735-34625778)
[»] chr3 (2 HSPs)
chr3 (82-126)||(18268013-18268056)
chr3 (82-126)||(40150579-40150622)


Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 34687122 - 34686798
Alignment:
Q  18 tagaagaagtaaacttatgatactctagttagggactcttggccacacacaagatacatttggcacacatatgattactttcaattaatatcattttctc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34687122 tagaagaagtaaacttatgatactctagttagggactcttggccacacacaagatacatttggcacacatatgattactttcaattaatatcattttctc 34687023  T
Q  118 aaattattaccggtgtgacgtgttgacgtgttaatgtcttgttccgttatgtatgtgcctgttatgttaatcgcaaaagtatctcgccagattaccactt 217  Q
    ||||||||||||||||||||||||        |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34687022 aaattattaccggtgtgacgtgtt--------aatgtcttgtcccgttatgtatgtgtctgttatgttaatcgcaaaagtatctcgccagattaccactt 34686931  T
Q  218 ggtcacactcccacacaagtacaactacttacacgtatacctaatcgtcaatgcgcaacacagcatatagcttcgagatttctgtgaaaggatcataaga 317  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34686930 ggtcacactcccgcacaagtacaactacttacacgtgtacctaatcgtcaatgcgcaacacagcatatagcttcgagatttctgtgaaaggatcataaga 34686831  T
Q  318 tttcgtttatgccatatcacacaactgcagagc 350  Q
    |||||||||||||||||||||||||||||||||    
T  34686830 tttcgtttatgccatatcacacaactgcagagc 34686798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 34709534 - 34709210
Alignment:
Q  18 tagaagaagtaaacttatgatactctagttagggactcttggccacacacaagatacatttggcacacatatgattactttcaattaatatcattttctc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34709534 tagaagaagtaaacttatgatactctagttagggactcttggccacacacaagatacatttggcacacatatgattactttcaattaatatcattttctc 34709435  T
Q  118 aaattattaccggtgtgacgtgttgacgtgttaatgtcttgttccgttatgtatgtgcctgttatgttaatcgcaaaagtatctcgccagattaccactt 217  Q
    ||||||||||||||||||||||||        |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34709434 aaattattaccggtgtgacgtgtt--------aatgtcttgtcccgttatgtatgtgtctgttatgttaatcgcaaaagtatctcgccagattaccactt 34709343  T
Q  218 ggtcacactcccacacaagtacaactacttacacgtatacctaatcgtcaatgcgcaacacagcatatagcttcgagatttctgtgaaaggatcataaga 317  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34709342 ggtcacactcccgcacaagtacaactacttacacgtgtacctaatcgtcaatgcgcaacacagcatatagcttcgagatttctgtgaaaggatcataaga 34709243  T
Q  318 tttcgtttatgccatatcacacaactgcagagc 350  Q
    |||||||||||||||||||||||||||||||||    
T  34709242 tttcgtttatgccatatcacacaactgcagagc 34709210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 16229573 - 16229508
Alignment:
Q  39 actctagttagggactcttggccacacacaagatacatttggcacacatatgattactttcaattaatat 108  Q
    |||||||||||||||||||||||| |    ||||||||||||||| ||| |||| |||||||||||||||    
T  16229573 actctagttagggactcttggccaaa----agatacatttggcacgcatgtgataactttcaattaatat 16229508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 133
Target Start/End: Original strand, 14268741 - 14268791
Alignment:
Q  82 acacatatgattactttcaattaatatcattttctcaaattattaccggtgt 133  Q
    |||||||| ||||| |||||||||  ||||||||||||||||||||||||||    
T  14268741 acacatatcattacgttcaattaag-tcattttctcaaattattaccggtgt 14268791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 75
Target Start/End: Original strand, 35888174 - 35888207
Alignment:
Q  42 ctagttagggactcttggccacacacaagataca 75  Q
    |||||||||||||| |||||||||||||||||||    
T  35888174 ctagttagggactcatggccacacacaagataca 35888207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 35888637 - 35888689
Alignment:
Q  89 tgattactttcaattaatatcattttctcaaattattaccggtgtgacgtgtt 141  Q
    ||||||| ||||||| || ||||||| |||||||||||||| ||||| |||||    
T  35888637 tgattacattcaatttatgtcattttgtcaaattattaccgctgtgatgtgtt 35888689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 42205843 - 42205886
Alignment:
Q  82 acacatatgattactttcaattaatatcattttctcaaattatta 126  Q
    ||||||||||||| ||||||||||  |||||||||||||||||||    
T  42205843 acacatatgattattttcaattaa-gtcattttctcaaattatta 42205886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 2517148 - 2517108
Alignment:
Q  92 ttactttcaattaatatcattttctcaaattattaccggtgt 133  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  2517148 ttacattcaattaat-tcattttctcaaattattaccggtgt 2517108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 21886565 - 21886520
Alignment:
Q  86 atatgattactttcaattaatatcattttctcaaattattaccggt 131  Q
    |||| ||||| |||||| | ||||||||||||||||||||||||||    
T  21886565 atataattacattcaatcactatcattttctcaaattattaccggt 21886520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 32369927 - 32369970
Alignment:
Q  89 tgattactttcaattaatatcattttctcaaattattaccggtgt 133  Q
    ||||||| |||||||||| ||||||||||||||||||| ||||||    
T  32369927 tgattacattcaattaat-tcattttctcaaattattatcggtgt 32369970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 126
Target Start/End: Complemental strand, 32855405 - 32855362
Alignment:
Q  82 acacatatgattactttcaattaatatcattttctcaaattatta 126  Q
    |||||||||||||| ||||||||| |||||||||| |||||||||    
T  32855405 acacatatgattacattcaattaa-atcattttcttaaattatta 32855362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 126
Target Start/End: Complemental strand, 6074078 - 6074035
Alignment:
Q  82 acacatatgattactttcaattaatatcattttctcaaattatta 126  Q
    |||||||||||||| ||||| |||| |||||||||||||||||||    
T  6074078 acacatatgattacgttcaaataat-tcattttctcaaattatta 6074035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 34625778 - 34625735
Alignment:
Q  89 tgattactttcaattaatatcattttctcaaattattaccggtgt 133  Q
    ||||||| |||||||||| ||||||||||||||||||| ||||||    
T  34625778 tgattacattcaattaat-tcattttctcaaattattatcggtgt 34625735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 18268013 - 18268056
Alignment:
Q  82 acacatatgattactttcaattaatatcattttctcaaattatta 126  Q
    |||||| ||||||| |||||||||| |||||||||||||||||||    
T  18268013 acacatgtgattacgttcaattaat-tcattttctcaaattatta 18268056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 40150579 - 40150622
Alignment:
Q  82 acacatatgattactttcaattaatatcattttctcaaattatta 126  Q
    |||||||||||||| || ||||| |||||||||||||||||||||    
T  40150579 acacatatgattacattgaatta-tatcattttctcaaattatta 40150622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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