View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12254_low_8 (Length: 309)
Name: NF12254_low_8
Description: NF12254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12254_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 19 - 299
Target Start/End: Original strand, 30221496 - 30221776
Alignment:
| Q |
19 |
gatcttctatgggattaggctatacatggaggaaatgaatgagaagacnnnnnnntcaaattccacagctgtagtaatgctcaacacaagaaatattgaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30221496 |
gatcttctatgggattaggctatacatggaggaaatgaatgagaagacaaaaaaatcaaattccacagctgtagtaatgctcaacacaagaaatattgaa |
30221595 |
T |
|
| Q |
119 |
ggttaccaatcattgaaggaaatgcaaaaaccagagtccaaaagtctttggggaaatcaaatttctttcttacaaataccaatacctaagctaacccaat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30221596 |
ggttaccaatcattgaaggaaatgcaaaaaccagagtccaaaagtctttggggaaatcaaatttctttcttacaaataccaatacctaagctaagccaat |
30221695 |
T |
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| Q |
219 |
cagaccctcttgagtttgtttggaaagctcgtaagttaatcaaaaggaagagacgctctttcggtgtttatctcacaggtt |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30221696 |
cagaccctcttgagtttgtttggaaagctcgtaagttaatcaaaaggaagagacgctctttcggtgtttatctcataggtt |
30221776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 19 - 293
Target Start/End: Complemental strand, 30227975 - 30227692
Alignment:
| Q |
19 |
gatcttctatgggattaggctatacatggaggaaatgaatgagaagacnnnnnnntcaaattccacagctgtagtaatgctcaacacaagaaatattgaa |
118 |
Q |
| |
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|||||||||||||||||||||||||||||| || | |||||||||||| |||||||||||||| || ||||||||||||||||||||||||| | |
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| T |
30227975 |
gatcttctatgggattaggctatacatggaagagaagaatgagaagacaaaaacatcaaattccacagcggtggtaatgctcaacacaagaaatattgga |
30227876 |
T |
|
| Q |
119 |
ggttaccaatcattgaaggaaatgcaaaaaccagagtccaaaagtctttggggaaatcaaatttctttcttacaaataccaatacctaagctaacccaat |
218 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||| ||||||||| | ||||| |
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| T |
30227875 |
ggttaccaatcagtgaaggaaatgcaaaaaccagagtccaaaggtctatggggaaataaaatttctttcttacaaatacctatacctaagatgtgccaat |
30227776 |
T |
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| Q |
219 |
ca---------gaccctcttgagtttgtttggaaagctcgtaagttaatcaaaaggaagagacgctctttcggtgtttatctca |
293 |
Q |
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|| | |||||||||||||||||||| ||||| | ||||||| ||||||||||| |||||| |||||||||||| |
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| T |
30227775 |
caaaaatctccaatcctcttgagtttgtttggaatactcgtgaactaatcaagaggaagagacgttctttcagtgtttatctca |
30227692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 21 - 291
Target Start/End: Complemental strand, 30031346 - 30031067
Alignment:
| Q |
21 |
tcttctatgggattaggctatacatggaggaaatgaatgagaagacnnnnnnntcaaattccacagctgtagtaatgctcaacacaagaaatattgaagg |
120 |
Q |
| |
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|||||||||| |||||||| |||||| | || ||||||||||| || ||||||||||||| || ||||||||||||||||||||||||| ||| |
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| T |
30031346 |
tcttctatggtattaggctttacatgaaagagatgaatgagaaaacaaaaatagcaaattccacagcagtggtaatgctcaacacaagaaatattggagg |
30031247 |
T |
|
| Q |
121 |
ttaccaatcattgaaggaaatgcaaaaaccagagtccaaaagtctttggggaaatcaaatttctttcttacaaataccaatacctaagctaacccaatca |
220 |
Q |
| |
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||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
30031246 |
ttaccgatcattgatggaaatgcaaaaaccagagtccaaaggtctttggggaaatcaaatttctttcttacaaataccaatacctaaagtaagccaatca |
30031147 |
T |
|
| Q |
221 |
g---------accctcttgagtttgtttggaaagctcgtaagttaatcaaaaggaagagacgctctttcggtgtttatct |
291 |
Q |
| |
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| |||||||||||||||||||||| ||||| | ||||||| |||||||||| |||||| |||||||||| |
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| T |
30031146 |
gtaatctccaaccctcttgagtttgtttggaattctcgtgaactaatcaagaggaagagacattctttcagtgtttatct |
30031067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 21 - 291
Target Start/End: Complemental strand, 30047617 - 30047338
Alignment:
| Q |
21 |
tcttctatgggattaggctatacatggaggaaatgaatgagaagacnnnnnnntcaaattccacagctgtagtaatgctcaacacaagaaatattgaagg |
120 |
Q |
| |
|
|||||||||| |||||||| |||||| | || ||||||||||| || ||||||||||||| || ||||||||||||||||||||||||| ||| |
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| T |
30047617 |
tcttctatggtattaggctttacatgaaagagatgaatgagaaaacaaaaagagcaaattccacagcagtggtaatgctcaacacaagaaatattggagg |
30047518 |
T |
|
| Q |
121 |
ttaccaatcattgaaggaaatgcaaaaaccagagtccaaaagtctttggggaaatcaaatttctttcttacaaataccaatacctaagctaacccaatca |
220 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
30047517 |
ttaccaatcattgacagaaatgcaaaaaccagagtgcaaaggtctttggggaaatcaaatttctttcttacaaataccaatacctaaagtaagtcaatca |
30047418 |
T |
|
| Q |
221 |
g---------accctcttgagtttgtttggaaagctcgtaagttaatcaaaaggaagagacgctctttcggtgtttatct |
291 |
Q |
| |
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| | |||||||||||||||||||| | ||| | ||||||| ||||||||||| |||||| |||||||||| |
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| T |
30047417 |
gtaatctccaatcctcttgagtttgtttggaattcccgtgaactaatcaagaggaagagacgttctttcagtgtttatct |
30047338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 21 - 291
Target Start/End: Complemental strand, 30061958 - 30061679
Alignment:
| Q |
21 |
tcttctatgggattaggctatacatggaggaaatgaatgagaagacnnnnnnntcaaattccacagctgtagtaatgctcaacacaagaaatattgaagg |
120 |
Q |
| |
|
|||||||||| |||||||| |||||| | || ||||||||||| || ||||||||||||| || ||||||||||||||||||||||||| ||| |
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| T |
30061958 |
tcttctatggtattaggctttacatgaaagagatgaatgagaaaacaaaaagagcaaattccacagcagtggtaatgctcaacacaagaaatattggagg |
30061859 |
T |
|
| Q |
121 |
ttaccaatcattgaaggaaatgcaaaaaccagagtccaaaagtctttggggaaatcaaatttctttcttacaaataccaatacctaagctaacccaatca |
220 |
Q |
| |
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|||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
30061858 |
ttaccaatcattgacagaaatgcaaaaaccagagtgcaaaggtctttggggaaatcaaatttctttcttacaaataccaatacctaaagtaagtcaatca |
30061759 |
T |
|
| Q |
221 |
g---------accctcttgagtttgtttggaaagctcgtaagttaatcaaaaggaagagacgctctttcggtgtttatct |
291 |
Q |
| |
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| | |||||||||||||||||||| | ||| | ||||||| ||||||||||| |||||| |||||||||| |
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| T |
30061758 |
gtaatctccaatcctcttgagtttgtttggaattcccgtgaactaatcaagaggaagagacgttctttcagtgtttatct |
30061679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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